Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SHT67_RS09025 | Genome accession | NZ_CP138653 |
| Coordinates | 1892348..1892875 (+) | Length | 175 a.a. |
| NCBI ID | WP_319464380.1 | Uniprot ID | - |
| Organism | Enterococcus faecalis strain ES-109 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1882490..1919159 | 1892348..1892875 | within | 0 |
Gene organization within MGE regions
Location: 1882490..1919159
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SHT67_RS08935 (SHT67_08935) | - | 1882490..1883626 (-) | 1137 | WP_265612161.1 | site-specific integrase | - |
| SHT67_RS08940 (SHT67_08940) | - | 1883739..1884353 (-) | 615 | WP_064687094.1 | SHOCT domain-containing protein | - |
| SHT67_RS08945 (SHT67_08945) | - | 1884367..1885101 (-) | 735 | WP_265612162.1 | DUF4950 domain-containing protein | - |
| SHT67_RS08950 (SHT67_08950) | - | 1885189..1885611 (-) | 423 | WP_080279980.1 | ImmA/IrrE family metallo-endopeptidase | - |
| SHT67_RS08955 (SHT67_08955) | - | 1885612..1885953 (-) | 342 | WP_243572903.1 | helix-turn-helix domain-containing protein | - |
| SHT67_RS08960 (SHT67_08960) | - | 1886243..1886434 (+) | 192 | WP_002371609.1 | hypothetical protein | - |
| SHT67_RS08965 (SHT67_08965) | - | 1886446..1886784 (+) | 339 | WP_064687097.1 | DUF771 domain-containing protein | - |
| SHT67_RS08970 (SHT67_08970) | - | 1886842..1887012 (+) | 171 | WP_010784067.1 | hypothetical protein | - |
| SHT67_RS08975 (SHT67_08975) | - | 1887176..1887589 (-) | 414 | WP_010784066.1 | hypothetical protein | - |
| SHT67_RS08980 (SHT67_08980) | - | 1887667..1888380 (+) | 714 | WP_010784065.1 | Rha family transcriptional regulator | - |
| SHT67_RS08985 (SHT67_08985) | - | 1888391..1888576 (+) | 186 | WP_033598023.1 | hypothetical protein | - |
| SHT67_RS08990 (SHT67_08990) | - | 1888587..1888778 (+) | 192 | WP_236547317.1 | hypothetical protein | - |
| SHT67_RS08995 (SHT67_08995) | - | 1889095..1889286 (-) | 192 | WP_002404543.1 | DUF1508 domain-containing protein | - |
| SHT67_RS09000 (SHT67_09000) | - | 1889446..1889748 (+) | 303 | WP_002404544.1 | hypothetical protein | - |
| SHT67_RS09005 (SHT67_09005) | - | 1889833..1890156 (+) | 324 | WP_033600921.1 | hypothetical protein | - |
| SHT67_RS09010 (SHT67_09010) | - | 1890149..1890835 (+) | 687 | WP_050444148.1 | DUF1071 domain-containing protein | - |
| SHT67_RS09015 (SHT67_09015) | - | 1890840..1891481 (+) | 642 | WP_319464379.1 | putative HNHc nuclease | - |
| SHT67_RS09020 (SHT67_09020) | - | 1891501..1892343 (+) | 843 | WP_319464427.1 | DNA replication protein | - |
| SHT67_RS09025 (SHT67_09025) | ssb | 1892348..1892875 (+) | 528 | WP_319464380.1 | single-stranded DNA-binding protein | Machinery gene |
| SHT67_RS09030 (SHT67_09030) | - | 1892887..1893216 (+) | 330 | WP_319464381.1 | hypothetical protein | - |
| SHT67_RS09035 (SHT67_09035) | - | 1893236..1893442 (+) | 207 | WP_142665576.1 | hypothetical protein | - |
| SHT67_RS09040 (SHT67_09040) | - | 1893495..1894244 (+) | 750 | WP_319464382.1 | site-specific DNA-methyltransferase | - |
| SHT67_RS09045 (SHT67_09045) | - | 1894228..1894695 (+) | 468 | WP_319464383.1 | YopX family protein | - |
| SHT67_RS09050 (SHT67_09050) | - | 1894692..1895027 (+) | 336 | WP_319464384.1 | hypothetical protein | - |
| SHT67_RS09055 (SHT67_09055) | - | 1895024..1895365 (+) | 342 | WP_319464385.1 | hypothetical protein | - |
| SHT67_RS09060 (SHT67_09060) | - | 1895362..1895610 (+) | 249 | WP_319464386.1 | hypothetical protein | - |
| SHT67_RS09065 (SHT67_09065) | - | 1895622..1896185 (+) | 564 | WP_319464387.1 | DUF3850 domain-containing protein | - |
| SHT67_RS09070 (SHT67_09070) | - | 1896199..1896516 (+) | 318 | WP_319464388.1 | replicase | - |
| SHT67_RS09075 (SHT67_09075) | - | 1896510..1896701 (+) | 192 | WP_319464389.1 | hypothetical protein | - |
| SHT67_RS09080 (SHT67_09080) | - | 1896702..1897121 (+) | 420 | WP_002404562.1 | transcriptional regulator | - |
| SHT67_RS09085 (SHT67_09085) | - | 1897398..1898279 (+) | 882 | WP_010826238.1 | hypothetical protein | - |
| SHT67_RS09090 (SHT67_09090) | - | 1898346..1898807 (+) | 462 | WP_319464390.1 | helix-turn-helix domain-containing protein | - |
| SHT67_RS09095 (SHT67_09095) | terL | 1898800..1900188 (+) | 1389 | WP_010828974.1 | phage terminase large subunit | - |
| SHT67_RS09100 (SHT67_09100) | - | 1900201..1901676 (+) | 1476 | WP_010711683.1 | phage portal protein | - |
| SHT67_RS09105 (SHT67_09105) | - | 1901651..1902697 (+) | 1047 | WP_319464391.1 | phage head morphogenesis protein | - |
| SHT67_RS09110 (SHT67_09110) | - | 1902700..1903020 (+) | 321 | WP_104884664.1 | hypothetical protein | - |
| SHT67_RS09115 (SHT67_09115) | - | 1903025..1903249 (+) | 225 | WP_002395890.1 | hypothetical protein | - |
| SHT67_RS09120 (SHT67_09120) | - | 1903316..1903546 (+) | 231 | WP_265612172.1 | hypothetical protein | - |
| SHT67_RS09125 (SHT67_09125) | - | 1903688..1904314 (+) | 627 | WP_265612173.1 | DUF4355 domain-containing protein | - |
| SHT67_RS09130 (SHT67_09130) | - | 1904328..1905230 (+) | 903 | WP_265612174.1 | DUF5309 family protein | - |
| SHT67_RS09135 (SHT67_09135) | - | 1905254..1905490 (+) | 237 | WP_104886104.1 | hypothetical protein | - |
| SHT67_RS09140 (SHT67_09140) | - | 1905499..1905843 (+) | 345 | WP_010784639.1 | hypothetical protein | - |
| SHT67_RS09145 (SHT67_09145) | - | 1905840..1906217 (+) | 378 | WP_319464392.1 | hypothetical protein | - |
| SHT67_RS09150 (SHT67_09150) | - | 1906210..1906608 (+) | 399 | WP_224615829.1 | HK97 gp10 family phage protein | - |
| SHT67_RS09155 (SHT67_09155) | - | 1906612..1906986 (+) | 375 | WP_002364487.1 | DUF6838 family protein | - |
| SHT67_RS09160 (SHT67_09160) | - | 1906987..1907829 (+) | 843 | WP_202226992.1 | major tail protein | - |
| SHT67_RS09165 (SHT67_09165) | gpG | 1907882..1908235 (+) | 354 | WP_002364485.1 | phage tail assembly chaperone G | - |
| SHT67_RS09170 (SHT67_09170) | - | 1908484..1911381 (+) | 2898 | WP_265612189.1 | tape measure protein | - |
| SHT67_RS09175 (SHT67_09175) | - | 1911371..1912105 (+) | 735 | WP_002411143.1 | hypothetical protein | - |
| SHT67_RS09180 (SHT67_09180) | - | 1912087..1914801 (+) | 2715 | WP_319464393.1 | phage tail spike protein | - |
| SHT67_RS09185 (SHT67_09185) | - | 1914816..1915724 (+) | 909 | WP_319464394.1 | phage baseplate upper protein | - |
| SHT67_RS09190 (SHT67_09190) | - | 1915717..1916034 (+) | 318 | WP_002383821.1 | hypothetical protein | - |
| SHT67_RS09195 (SHT67_09195) | - | 1916027..1916344 (+) | 318 | WP_319464395.1 | hypothetical protein | - |
| SHT67_RS09200 (SHT67_09200) | - | 1916344..1916895 (+) | 552 | WP_319464396.1 | hypothetical protein | - |
| SHT67_RS09205 (SHT67_09205) | - | 1916910..1917284 (+) | 375 | WP_319464397.1 | hypothetical protein | - |
| SHT67_RS09210 (SHT67_09210) | - | 1917284..1917421 (+) | 138 | WP_002380794.1 | XkdX family protein | - |
| SHT67_RS09215 (SHT67_09215) | - | 1917456..1917689 (+) | 234 | WP_002367247.1 | hemolysin XhlA family protein | - |
| SHT67_RS09220 (SHT67_09220) | - | 1917692..1917895 (+) | 204 | WP_265612178.1 | phage holin | - |
| SHT67_RS09225 (SHT67_09225) | - | 1917900..1919159 (+) | 1260 | WP_319464398.1 | LysM peptidoglycan-binding domain-containing protein | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19331.17 Da Isoelectric Point: 4.7078
>NTDB_id=904067 SHT67_RS09025 WP_319464380.1 1892348..1892875(+) (ssb) [Enterococcus faecalis strain ES-109]
MINQVVLVGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSIQTSQNSGTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
MINQVVLVGRLTKDIDLRYTASGSAVGSFTLAVNRNFTNQNGEREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYDNQQGQRVYVTEVVCESFQLLESKSTNENRNSIQTSQNSGTGVQNNFESNYATNQNKGLNQQNNSQQMSFGGDVDPFA
GAGNSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=904067 SHT67_RS09025 WP_319464380.1 1892348..1892875(+) (ssb) [Enterococcus faecalis strain ES-109]
ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAAAGTTTCCAATTATTAGAGTCAAAAAG
CACCAACGAGAATAGAAATAGCATTCAGACTTCACAGAATAGCGGTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGTGCAGGTAATTCAATCGACATTAGCGACGATGATCTGCCGTTCTAG
ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTTGG
AAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTT
GGCGTAAGCCTGCTGAAACAATGGCTAATTATGCTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGT
AATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAAAGTTTCCAATTATTAGAGTCAAAAAG
CACCAACGAGAATAGAAATAGCATTCAGACTTCACAGAATAGCGGTACAGGCGTTCAAAATAATTTCGAGAGTAATTATG
CCACGAATCAAAACAAAGGCTTAAATCAGCAAAATAACAGCCAACAAATGTCGTTTGGTGGAGATGTAGATCCGTTCGCA
GGTGCAGGTAATTCAATCGACATTAGCGACGATGATCTGCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.112 |
100 |
0.611 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.989 |
100 |
0.6 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |