Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   SD459_RS17820 Genome accession   NZ_CP138627
Coordinates   3516670..3517359 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain AYGS-17     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3511670..3522359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD459_RS17785 (SD459_17780) - 3511868..3512350 (-) 483 WP_022553865.1 flagellar protein FlgN -
  SD459_RS17790 (SD459_17785) flgM 3512365..3512631 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SD459_RS17795 (SD459_17790) - 3512701..3513120 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  SD459_RS17800 (SD459_17795) comFC 3513194..3513883 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  SD459_RS17805 (SD459_17800) - 3513889..3514173 (-) 285 WP_022553866.1 late competence development ComFB family protein -
  SD459_RS17810 (SD459_17805) comFA 3514231..3515616 (-) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  SD459_RS17815 (SD459_17810) - 3515724..3516572 (-) 849 WP_003151387.1 DegV family protein -
  SD459_RS17820 (SD459_17815) degU 3516670..3517359 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SD459_RS17825 (SD459_17820) degS 3517436..3518599 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  SD459_RS17830 (SD459_17825) - 3518822..3519469 (+) 648 WP_063636496.1 YigZ family protein -
  SD459_RS17835 (SD459_17830) - 3519474..3520667 (+) 1194 WP_017418814.1 LCP family protein -
  SD459_RS17840 (SD459_17835) - 3520767..3521843 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=903772 SD459_RS17820 WP_003219701.1 3516670..3517359(-) (degU) [Bacillus velezensis strain AYGS-17]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=903772 SD459_RS17820 WP_003219701.1 3516670..3517359(-) (degU) [Bacillus velezensis strain AYGS-17]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCATGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGTA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1