Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   SD459_RS17800 Genome accession   NZ_CP138627
Coordinates   3513194..3513883 (-) Length   229 a.a.
NCBI ID   WP_199803302.1    Uniprot ID   -
Organism   Bacillus velezensis strain AYGS-17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3508194..3518883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD459_RS17765 (SD459_17760) fliW 3508285..3508716 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  SD459_RS17770 (SD459_17765) - 3508746..3509315 (-) 570 WP_017418818.1 DUF6470 family protein -
  SD459_RS17775 (SD459_17770) flgL 3509406..3510323 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  SD459_RS17780 (SD459_17775) flgK 3510335..3511852 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  SD459_RS17785 (SD459_17780) - 3511868..3512350 (-) 483 WP_022553865.1 flagellar protein FlgN -
  SD459_RS17790 (SD459_17785) flgM 3512365..3512631 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SD459_RS17795 (SD459_17790) - 3512701..3513120 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  SD459_RS17800 (SD459_17795) comFC 3513194..3513883 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  SD459_RS17805 (SD459_17800) - 3513889..3514173 (-) 285 WP_022553866.1 late competence development ComFB family protein -
  SD459_RS17810 (SD459_17805) comFA 3514231..3515616 (-) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  SD459_RS17815 (SD459_17810) - 3515724..3516572 (-) 849 WP_003151387.1 DegV family protein -
  SD459_RS17820 (SD459_17815) degU 3516670..3517359 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SD459_RS17825 (SD459_17820) degS 3517436..3518599 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25332.01 Da        Isoelectric Point: 8.2927

>NTDB_id=903770 SD459_RS17800 WP_199803302.1 3513194..3513883(-) (comFC) [Bacillus velezensis strain AYGS-17]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=903770 SD459_RS17800 WP_199803302.1 3513194..3513883(-) (comFC) [Bacillus velezensis strain AYGS-17]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594