Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   SD459_RS15790 Genome accession   NZ_CP138627
Coordinates   3123553..3123693 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain AYGS-17     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3118553..3128693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD459_RS15765 (SD459_15760) - 3118850..3119233 (-) 384 WP_017419422.1 hotdog fold thioesterase -
  SD459_RS15770 (SD459_15765) comA 3119255..3119899 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  SD459_RS15775 (SD459_15770) comP 3119980..3122283 (-) 2304 WP_025650219.1 histidine kinase Regulator
  SD459_RS15785 (SD459_15780) comQ 3122436..3123368 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  SD459_RS15790 (SD459_15785) degQ 3123553..3123693 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  SD459_RS15795 (SD459_15790) - 3124158..3124499 (+) 342 WP_014418765.1 hypothetical protein -
  SD459_RS15800 (SD459_15795) - 3124506..3125729 (-) 1224 WP_014418766.1 EAL and HDOD domain-containing protein -
  SD459_RS15805 (SD459_15800) - 3125859..3127325 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  SD459_RS15810 (SD459_15805) - 3127343..3127894 (-) 552 WP_025853916.1 cysteine hydrolase family protein -
  SD459_RS15815 (SD459_15810) - 3127991..3128389 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=903767 SD459_RS15790 WP_003152043.1 3123553..3123693(-) (degQ) [Bacillus velezensis strain AYGS-17]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=903767 SD459_RS15790 WP_003152043.1 3123553..3123693(-) (degQ) [Bacillus velezensis strain AYGS-17]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891