Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   SD459_RS15785 Genome accession   NZ_CP138627
Coordinates   3122436..3123368 (-) Length   310 a.a.
NCBI ID   WP_025650217.1    Uniprot ID   -
Organism   Bacillus velezensis strain AYGS-17     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3117436..3128368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD459_RS15750 (SD459_15745) - 3117692..3118168 (+) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  SD459_RS15755 (SD459_15750) - 3118168..3118452 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  SD459_RS15760 (SD459_15755) mnhG 3118436..3118810 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  SD459_RS15765 (SD459_15760) - 3118850..3119233 (-) 384 WP_017419422.1 hotdog fold thioesterase -
  SD459_RS15770 (SD459_15765) comA 3119255..3119899 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  SD459_RS15775 (SD459_15770) comP 3119980..3122283 (-) 2304 WP_025650219.1 histidine kinase Regulator
  SD459_RS15785 (SD459_15780) comQ 3122436..3123368 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  SD459_RS15790 (SD459_15785) degQ 3123553..3123693 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  SD459_RS15795 (SD459_15790) - 3124158..3124499 (+) 342 WP_014418765.1 hypothetical protein -
  SD459_RS15800 (SD459_15795) - 3124506..3125729 (-) 1224 WP_014418766.1 EAL and HDOD domain-containing protein -
  SD459_RS15805 (SD459_15800) - 3125859..3127325 (-) 1467 WP_014418767.1 nicotinate phosphoribosyltransferase -
  SD459_RS15810 (SD459_15805) - 3127343..3127894 (-) 552 WP_025853916.1 cysteine hydrolase family protein -

Sequence


Protein


Download         Length: 310 a.a.        Molecular weight: 35663.80 Da        Isoelectric Point: 5.4532

>NTDB_id=903766 SD459_RS15785 WP_025650217.1 3122436..3123368(-) (comQ) [Bacillus velezensis strain AYGS-17]
MKSIIERNIFNEHLMQLLLRFIEPKKNFSLAESAVLHYVIFDGENQETAVNLGAAIEILTLTSDIIDDLEDEDNRDAPWM
KIDRSLALSAAFSLYTAGLQSINSISTNPLVIKYVLKYIQDAMQGQHDDLINKPETEDECLEVIKLKCGSLFALANVTGT
LLATGEFNKSVESYSYYKGIFEQISGDYHAIFKDNTSDILKDKHTLINLYLKRLFNKSSQELLRIFSDQKLYSQLRLNKK
EFIQKLYDSGASQYVSVLYQLYMHKCGTEVENLNLDIKKIKIIKKHLLNNKNNKKDDEDAEFNKLFFELS

Nucleotide


Download         Length: 933 bp        

>NTDB_id=903766 SD459_RS15785 WP_025650217.1 3122436..3123368(-) (comQ) [Bacillus velezensis strain AYGS-17]
ATGAAGAGTATAATAGAGCGGAACATATTTAATGAACATCTAATGCAGCTCCTTCTTCGTTTTATTGAACCAAAAAAAAA
TTTTTCTCTAGCTGAATCAGCTGTTTTGCATTATGTGATCTTTGACGGCGAAAATCAAGAAACCGCAGTGAACTTAGGTG
CCGCTATTGAAATTCTTACACTTACTTCCGATATAATTGATGATCTGGAAGATGAGGATAATCGAGATGCTCCTTGGATG
AAGATAGATCGTTCACTAGCATTAAGTGCAGCATTTTCATTATACACAGCAGGATTGCAAAGCATTAATTCGATTAGTAC
GAATCCTTTAGTGATTAAGTATGTATTAAAATATATTCAAGATGCAATGCAGGGTCAACATGATGATTTGATCAATAAAC
CAGAGACAGAAGATGAATGTTTAGAGGTAATCAAGTTAAAATGCGGAAGTTTATTTGCGTTAGCAAATGTTACTGGTACG
CTTTTAGCAACTGGAGAATTCAATAAGTCTGTTGAAAGTTATTCCTATTATAAAGGGATATTTGAACAAATTTCCGGTGA
TTATCATGCTATTTTTAAGGATAATACTAGTGATATTCTGAAAGATAAACATACATTGATTAATTTATATCTTAAGCGCT
TGTTTAATAAGTCTTCTCAAGAATTGCTTCGTATATTCTCAGATCAAAAATTATATTCGCAACTGCGGCTTAATAAAAAA
GAGTTTATTCAAAAGCTGTATGATTCTGGAGCATCTCAATATGTTTCGGTTTTATACCAACTATACATGCATAAGTGTGG
AACTGAAGTTGAAAATTTAAATTTAGATATAAAGAAGATAAAAATAATAAAAAAACACTTGTTGAATAATAAGAATAATA
AGAAGGATGATGAAGATGCAGAATTTAATAAATTATTTTTTGAATTATCCTGA

Domains


Predicted by InterproScan.

(41-227)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

61.246

93.226

0.571