Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SD459_RS15770 Genome accession   NZ_CP138627
Coordinates   3119255..3119899 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain AYGS-17     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3114255..3124899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD459_RS15735 (SD459_15730) - 3115440..3115871 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  SD459_RS15740 (SD459_15735) - 3115871..3116212 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  SD459_RS15745 (SD459_15740) - 3116205..3117686 (+) 1482 WP_025650220.1 Na+/H+ antiporter subunit D -
  SD459_RS15750 (SD459_15745) - 3117692..3118168 (+) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  SD459_RS15755 (SD459_15750) - 3118168..3118452 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  SD459_RS15760 (SD459_15755) mnhG 3118436..3118810 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  SD459_RS15765 (SD459_15760) - 3118850..3119233 (-) 384 WP_017419422.1 hotdog fold thioesterase -
  SD459_RS15770 (SD459_15765) comA 3119255..3119899 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  SD459_RS15775 (SD459_15770) comP 3119980..3122283 (-) 2304 WP_025650219.1 histidine kinase Regulator
  SD459_RS15785 (SD459_15780) comQ 3122436..3123368 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  SD459_RS15790 (SD459_15785) degQ 3123553..3123693 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  SD459_RS15795 (SD459_15790) - 3124158..3124499 (+) 342 WP_014418765.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=903764 SD459_RS15770 WP_014418762.1 3119255..3119899(-) (comA) [Bacillus velezensis strain AYGS-17]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=903764 SD459_RS15770 WP_014418762.1 3119255..3119899(-) (comA) [Bacillus velezensis strain AYGS-17]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86