NTDB

Overview

Name	comEA	Type	Machinery gene
Locus tag	SD459_RS12785	Genome accession	NZ_CP138627
Coordinates	2573151..2573765 (-)	Length	204 a.a.
NCBI ID	WP_013352942.1	Uniprot ID	A0A411A874
Organism	Bacillus velezensis strain AYGS-17
Function	dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2568151..2578765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SD459_RS12755 (SD459_12750)	rpsT	2568454..2568720 (+)	267	WP_003152876.1	30S ribosomal protein S20	-
SD459_RS12760 (SD459_12755)	holA	2568683..2569778 (-)	1096	Protein_2475	DNA polymerase III subunit delta	-
SD459_RS12765 (SD459_12760)	-	2569818..2569969 (-)	152	Protein_2476	hypothetical protein	-
SD459_RS12770 (SD459_12765)	-	2570010..2570144 (+)	135	WP_003152870.1	YqzM family protein	-
SD459_RS12775 (SD459_12770)	comEC	2570163..2572514 (-)	2352	WP_017418179.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
SD459_RS12780 (SD459_12775)	-	2572515..2573084 (-)	570	WP_003152868.1	ComE operon protein 2	-
SD459_RS12785 (SD459_12780)	comEA	2573151..2573765 (-)	615	WP_013352942.1	helix-hairpin-helix domain-containing protein	Machinery gene
SD459_RS12790 (SD459_12785)	comER	2573824..2574645 (+)	822	WP_014305449.1	late competence protein ComER	-
SD459_RS12795 (SD459_12790)	-	2574714..2575451 (-)	738	WP_014305450.1	class I SAM-dependent methyltransferase	-
SD459_RS12800 (SD459_12795)	rsfS	2575448..2575804 (-)	357	WP_003152864.1	ribosome silencing factor	-
SD459_RS12805 (SD459_12800)	yqeK	2575801..2576382 (-)	582	WP_017418181.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
SD459_RS12810 (SD459_12805)	-	2576372..2576941 (-)	570	WP_017418182.1	nicotinate-nucleotide adenylyltransferase	-
SD459_RS12815 (SD459_12810)	yhbY	2576952..2577242 (-)	291	WP_003152858.1	ribosome assembly RNA-binding protein YhbY	-
SD459_RS12820 (SD459_12815)	aroE	2577236..2578078 (-)	843	WP_017418183.1	shikimate dehydrogenase	-

Sequence

Protein

Download Length: 204 a.a. Molecular weight: 22190.27 Da Isoelectric Point: 5.4841

                                >NTDB_id=903755 SD459_RS12785 WP_013352942.1 2573151..2573765(-) (comEA) [Bacillus velezensis strain AYGS-17]

MTKAMMTERLRRNLKILGACLAAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDVKGAVRNPGVY

EMKAGDRVTQAIEKAGGLKKKADELNVNLAEQLQDGTIVYIPSEGEEENHPKTAAGEKENAAVNINTASLDELQAISGVG

QKKAEAIIAYREENGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide

Download Length: 615 bp

                                >NTDB_id=903755 SD459_RS12785 WP_013352942.1 2573151..2573765(-) (comEA) [Bacillus velezensis strain AYGS-17]

ATGACGAAAGCGATGATGACGGAGCGGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGCGGCAGGGGCGGTTTT

TATCTGTATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCGGCAT

CCGTCGCGGACAAAAAAGACACCGCAGACGATAAGATTATGATTGATGTGAAAGGTGCGGTCCGAAATCCCGGCGTGTAT

GAAATGAAAGCGGGAGACAGAGTGACGCAAGCCATTGAAAAAGCCGGAGGCCTGAAGAAAAAGGCGGATGAATTGAATGT

TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAAGAGAATCACCCGAAAACAG

CAGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTTTGGACGAACTTCAGGCGATTTCCGGGGTGGGG

CAGAAAAAAGCGGAAGCCATTATCGCCTACCGAGAAGAAAACGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC

AGGCTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(141-202)

SLBB domain (SLBB)

(68-122)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A411A874

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comEA	Bacillus subtilis subsp. subtilis str. 168	58.854	94.118	0.554
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	35.545	100	0.368
comEA/celA/cilE	Streptococcus mitis SK321	35.071	100	0.363

Detailed information NTG0903755