Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SD459_RS12615 Genome accession   NZ_CP138627
Coordinates   2541576..2542343 (-) Length   255 a.a.
NCBI ID   WP_063636710.1    Uniprot ID   -
Organism   Bacillus velezensis strain AYGS-17     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2536576..2547343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD459_RS12595 (SD459_12590) - 2536778..2537590 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  SD459_RS12600 (SD459_12595) ccpN 2537616..2538254 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  SD459_RS12605 (SD459_12600) glyS 2538355..2540394 (-) 2040 WP_063636709.1 glycine--tRNA ligase subunit beta -
  SD459_RS12610 (SD459_12605) glyQ 2540387..2541274 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  SD459_RS12615 (SD459_12610) recO 2541576..2542343 (-) 768 WP_063636710.1 DNA repair protein RecO Machinery gene
  SD459_RS12620 (SD459_12615) - 2542380..2542523 (-) 144 WP_007408286.1 YqzL family protein -
  SD459_RS12625 (SD459_12620) era 2542679..2543584 (-) 906 WP_007408285.1 GTPase Era -
  SD459_RS12630 (SD459_12625) - 2543565..2543975 (-) 411 WP_017418172.1 cytidine deaminase -
  SD459_RS12635 (SD459_12630) - 2544099..2544473 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  SD459_RS12640 (SD459_12635) ybeY 2544454..2544927 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  SD459_RS12645 (SD459_12640) - 2544928..2547060 (-) 2133 WP_063636711.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29419.08 Da        Isoelectric Point: 8.7972

>NTDB_id=903752 SD459_RS12615 WP_063636710.1 2541576..2542343(-) (recO) [Bacillus velezensis strain AYGS-17]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSREG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGNVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=903752 SD459_RS12615 WP_063636710.1 2541576..2542343(-) (recO) [Bacillus velezensis strain AYGS-17]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCTGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCCGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAACGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGGCTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894