Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   SCI76_RS14830 Genome accession   NZ_CP138621
Coordinates   2923258..2923620 (+) Length   120 a.a.
NCBI ID   WP_028411997.1    Uniprot ID   -
Organism   Priestia sp. HNGD-A6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2916888..2927877 2923258..2923620 within 0


Gene organization within MGE regions


Location: 2916888..2927877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI76_RS14790 - 2916888..2917718 (+) 831 WP_328179818.1 M23 family metallopeptidase -
  SCI76_RS14795 spoIIID 2917994..2918257 (+) 264 WP_013059792.1 sporulation transcriptional regulator SpoIIID -
  SCI76_RS14800 - 2918444..2919445 (+) 1002 WP_013059791.1 rod shape-determining protein -
  SCI76_RS14805 - 2919560..2920384 (+) 825 WP_328179817.1 flagellar hook-basal body protein -
  SCI76_RS14810 - 2920408..2921229 (+) 822 WP_168761651.1 flagellar hook-basal body protein -
  SCI76_RS14815 fabZ 2921313..2921747 (+) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SCI76_RS14820 - 2921776..2922198 (-) 423 WP_028411995.1 helix-turn-helix domain-containing protein -
  SCI76_RS14825 - 2922724..2923161 (-) 438 WP_048021732.1 YwpF-like family protein -
  SCI76_RS14830 ssbB 2923258..2923620 (+) 363 WP_028411997.1 single-stranded DNA-binding protein Machinery gene
  SCI76_RS14835 - 2923903..2924949 (-) 1047 WP_047749581.1 LysM peptidoglycan-binding domain-containing protein -
  SCI76_RS14840 - 2925247..2927877 (-) 2631 WP_221833738.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=903674 SCI76_RS14830 WP_028411997.1 2923258..2923620(+) (ssbB) [Priestia sp. HNGD-A6]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSDSSSFGSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=903674 SCI76_RS14830 WP_028411997.1 2923258..2923620(+) (ssbB) [Priestia sp. HNGD-A6]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAGCCGGAGCTTCGATATACCCATGAAGGGATTGCCGTATC
TACTATTACGTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACAGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGCGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCGGTTAAATTTTTAAGTGGAAAGCC
ATCTGATTCTTCTTCATTTGGTTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

93.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508