Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   ABI116_RS16085 Genome accession   NZ_CP157214
Coordinates   3043727..3044731 (-) Length   334 a.a.
NCBI ID   WP_003229285.1    Uniprot ID   P25144
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS21     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3038727..3049731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI116_RS16060 (ABI116_16060) acuA 3039654..3040286 (+) 633 WP_003229296.1 acetoin utilization protein acetyltransferase AcuA -
  ABI116_RS16065 (ABI116_16065) acuB 3040313..3040957 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  ABI116_RS16070 (ABI116_16070) acuC 3040954..3042117 (+) 1164 WP_004398517.1 acetoin utilization protein AcuC -
  ABI116_RS16075 (ABI116_16075) motS 3042128..3042856 (-) 729 WP_003229290.1 flagellar motor protein MotS -
  ABI116_RS16080 (ABI116_16080) motP 3042846..3043664 (-) 819 WP_004398692.1 flagellar motor protein MotP -
  ABI116_RS16085 (ABI116_16085) ccpA 3043727..3044731 (-) 1005 WP_003229285.1 catabolite control protein A Regulator
  ABI116_RS16090 (ABI116_16090) aroX 3045007..3046083 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  ABI116_RS16095 (ABI116_16095) ytxJ 3046319..3046645 (-) 327 WP_003229280.1 bacillithiol system redox-active protein YtxJ -
  ABI116_RS16100 (ABI116_16100) ytxH 3046669..3047124 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  ABI116_RS16105 (ABI116_16105) ytxG 3047155..3047577 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  ABI116_RS16110 (ABI116_16110) murC 3047739..3049037 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36940.34 Da        Isoelectric Point: 5.0249

>NTDB_id=903064 ABI116_RS16085 WP_003229285.1 3043727..3044731(-) (ccpA) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=903064 ABI116_RS16085 WP_003229285.1 3043727..3044731(-) (ccpA) [Bacillus subtilis subsp. subtilis isolate FELIX_MS21]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGGAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGATTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCTCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1ZVV
  PDB 2FEP
  PDB 3OQM
  PDB 3OQN
  PDB 3OQO

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.545

98.802

0.539
  ccpA Streptococcus gordonii str. Challis substr. CH1

53.636

98.802

0.53
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503