Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   SGJ46_RS10130 Genome accession   NZ_CP138461
Coordinates   2090525..2092927 (-) Length   800 a.a.
NCBI ID   WP_177156192.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CZH-5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2085845..2093696 2090525..2092927 within 0


Gene organization within MGE regions


Location: 2085845..2093696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS10105 purM 2085845..2086915 (+) 1071 WP_005176576.1 phosphoribosylformylglycinamidine cyclo-ligase -
  SGJ46_RS10110 purN 2086922..2087551 (+) 630 WP_016660003.1 phosphoribosylglycinamide formyltransferase -
  SGJ46_RS10115 - 2087628..2088431 (-) 804 WP_177155451.1 alpha/beta fold hydrolase -
  SGJ46_RS10120 sppA 2088428..2089453 (-) 1026 WP_177155450.1 signal peptide peptidase SppA -
  SGJ46_RS10125 - 2089584..2090528 (+) 945 WP_177155449.1 lysophospholipid acyltransferase family protein -
  SGJ46_RS10130 comA/comEC 2090525..2092927 (-) 2403 WP_177156192.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SGJ46_RS10135 lolD 2093013..2093696 (-) 684 WP_005176563.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 91534.63 Da        Isoelectric Point: 7.5248

>NTDB_id=902931 SGJ46_RS10130 WP_177156192.1 2090525..2092927(-) (comA/comEC) [Acinetobacter indicus strain CZH-5]
MFKIMGAGWILGIACMGKMLWPMLDFPLWLSGLLLIILLLQQIAALHWSHLGIQLINTCVAFVITFLLGLNFAQNQLQER
LIFRELTRQPAEVVVYVQQINQLGSSQLRQPVQVLNRHSQPVQWLALLPAEQELQLGRYYRLQGQTLPAHSFAVPGAFDI
EQWYLQQNIMSGFQVQSIVELTESELYRLGFGAHLRQHQQLWPQFKLWIETQRLQIRDFIQQQALQHPGLILALLTGDKS
LLDEATEQQFQRFGMSHLLAISGPHVLIFAAMLCFVLQRLVTRYWPELYARLPRSYLLLLPFMGCVFVYCAYVGFEIPAL
RTLLICLVAGACLLLKQPIQPLSLLIGSASLLLLLDPLSVLSAAFWLSYGACFVLLRIYQTLRQQPVHPQQTLMQKLWQG
FRLLFESQWKIFIALFPLMIIFFKQIAWIAPLSNLLAIPWIGLVIVPLDILAGLSFYLAEPLSQLLFQLNDLALSLLLGC
LQLLDLLFAPQLIPVALSPPMLLSLVLGLIILFLPAGLVPKAWSALCLLPLLFQDQFSRQVELTVLDVGQGQAIFLRYRE
HSMMIDMGGHYDEQKWSIGRQIIQPFLSVKGVQQLDYLWLTHLDQDHSGAYQTLKPQLQVQQIYANAQLEVHPDSRFDYC
RQGQQWQWQPGIQIQVLSPKPEQLNPVEQQKNESSCVLLVEFAQAQPYSRFLLMGDAGWPTEYQLLQDYPDLKVDVLVLG
HHGSRHSSSYQFLKQLEPKLAIASAGLNNRYGHPSTQVQARLNALKIPLWQTAQQGSIQFYPTENEVLPYRHTRVWLQRD

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=902931 SGJ46_RS10130 WP_177156192.1 2090525..2092927(-) (comA/comEC) [Acinetobacter indicus strain CZH-5]
ATGTTCAAAATCATGGGCGCCGGCTGGATTTTAGGTATTGCCTGTATGGGCAAAATGCTATGGCCGATGCTGGATTTCCC
GCTCTGGTTGTCAGGCCTGCTACTGATTATCCTGCTTTTACAGCAAATAGCTGCTTTACATTGGTCCCATCTGGGCATCC
AATTGATTAATACCTGTGTGGCATTTGTCATTACATTTTTGTTGGGGCTGAATTTTGCCCAAAACCAGTTGCAAGAGCGG
TTGATATTTCGTGAACTGACCCGCCAGCCGGCAGAGGTGGTGGTCTATGTCCAGCAAATCAATCAGCTGGGTAGCAGCCA
GCTCCGGCAACCGGTTCAGGTGCTGAACCGGCATAGCCAGCCGGTGCAATGGCTGGCCTTGCTGCCGGCTGAACAGGAAC
TACAGCTGGGGCGTTATTATCGTTTACAGGGGCAGACCTTGCCGGCGCACAGTTTTGCCGTTCCGGGTGCGTTTGATATA
GAGCAGTGGTATCTCCAGCAAAATATCATGAGCGGCTTTCAGGTCCAGTCGATTGTGGAACTGACTGAATCGGAACTGTA
TCGGCTGGGATTTGGGGCACATTTAAGACAGCATCAGCAACTCTGGCCGCAATTTAAATTGTGGATCGAAACACAGCGTT
TACAGATTCGTGACTTTATCCAGCAGCAGGCATTGCAGCATCCCGGCTTAATACTGGCACTGCTGACTGGCGATAAAAGT
TTACTCGATGAAGCCACCGAGCAGCAGTTTCAGCGTTTCGGGATGAGTCATTTGCTGGCGATTTCCGGGCCGCATGTGCT
GATTTTTGCCGCCATGCTGTGTTTTGTGCTGCAGCGCCTGGTCACTCGCTATTGGCCCGAATTATATGCGCGATTGCCTC
GAAGTTATCTGCTGTTGCTGCCGTTTATGGGCTGTGTATTTGTATATTGTGCCTATGTTGGGTTTGAAATTCCTGCGCTC
AGAACTTTACTGATTTGTCTGGTGGCAGGCGCCTGCCTGTTGCTAAAGCAGCCGATACAGCCGCTGTCTTTGCTGATTGG
TAGTGCTTCGTTATTGCTGCTGCTTGATCCGTTGAGTGTGCTGTCGGCGGCATTCTGGCTGTCTTATGGCGCCTGCTTTG
TGCTGTTAAGGATTTACCAGACCCTCCGGCAACAACCGGTGCATCCGCAGCAGACGTTGATGCAGAAATTGTGGCAGGGC
TTCCGGCTGTTATTTGAATCGCAATGGAAAATTTTTATTGCGCTGTTTCCGCTAATGATTATTTTCTTCAAGCAGATTGC
CTGGATTGCACCGCTGAGTAATCTATTGGCCATTCCCTGGATCGGTCTGGTGATTGTGCCGCTGGATATTCTGGCCGGTT
TAAGTTTTTATCTGGCGGAACCGCTGAGCCAGTTGCTGTTTCAGCTCAATGACTTGGCGCTAAGTCTGTTATTGGGTTGT
TTGCAGTTGCTGGATCTGCTGTTTGCACCACAACTGATTCCGGTTGCGCTGAGTCCACCGATGCTGCTGAGTCTGGTGCT
GGGACTGATCATTTTATTTCTTCCCGCAGGTCTAGTGCCTAAAGCCTGGTCAGCGCTGTGTTTATTGCCTTTGCTGTTTC
AGGACCAGTTTTCTCGGCAGGTGGAACTTACTGTGCTGGATGTTGGGCAGGGGCAGGCAATCTTTTTACGCTATCGTGAA
CACAGCATGATGATTGATATGGGCGGTCATTATGATGAACAGAAATGGAGTATCGGCCGGCAGATTATCCAGCCCTTTTT
AAGTGTCAAAGGCGTGCAGCAGTTAGATTATCTATGGCTGACCCATCTGGATCAGGATCATAGCGGCGCTTATCAGACTT
TAAAGCCACAGTTACAGGTGCAGCAGATCTATGCCAATGCACAGCTTGAGGTGCATCCTGACAGTCGCTTTGACTATTGC
CGGCAGGGACAGCAATGGCAGTGGCAGCCGGGCATCCAGATTCAGGTACTCTCTCCGAAACCGGAACAGTTAAATCCTGT
AGAACAGCAGAAAAATGAAAGTTCCTGTGTGCTGCTGGTTGAGTTTGCACAGGCTCAGCCTTATTCACGCTTTTTATTGA
TGGGCGATGCAGGCTGGCCGACTGAATATCAGTTATTACAGGATTATCCGGATTTAAAAGTGGATGTGCTGGTGCTCGGC
CATCATGGTAGCCGGCACAGTTCATCTTACCAATTTTTAAAACAGCTGGAGCCTAAACTGGCAATTGCATCGGCGGGGCT
GAATAACCGTTATGGGCATCCGAGCACGCAGGTACAAGCCCGACTGAACGCCTTAAAAATTCCATTATGGCAGACCGCGC
AGCAGGGTAGCATCCAGTTTTATCCCACTGAGAATGAGGTGCTACCGTACCGGCATACGCGGGTTTGGCTGCAGCGCGAT
TAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(547-657)

Domain of unknown function (DUF4131) (DUF4131)

(25-179)

Competence protein (Competence)

(234-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

48.162

100

0.491
  comA/comEC Acinetobacter baylyi ADP1

48.089

100

0.488
  comA/comEC Acinetobacter baumannii strain A118

47.672

100

0.486