Detailed information NTG0902542

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: SD196_RS18705
• Genome accession: NZ_CP138377
• Coordinates: 4081697..4083907 (-)
• Length: 736 a.a.
• NCBI ID: WP_416310538.1
• Uniprot ID: -
• Organism: Pseudomonas sp. W03
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4076697..4088907

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SD196_RS18670 (SD196_18630)	murB	4077057..4078076 (-)	1020	WP_416310535.1	UDP-N-acetylmuramate dehydrogenase	-
SD196_RS18675 (SD196_18635)	-	4078073..4078537 (-)	465	WP_275611025.1	low molecular weight protein-tyrosine-phosphatase	-
SD196_RS18680 (SD196_18640)	kdsB	4078537..4079301 (-)	765	WP_416310536.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
SD196_RS18685 (SD196_18645)	-	4079306..4079491 (-)	186	WP_009621404.1	Trm112 family protein	-
SD196_RS18690 (SD196_18650)	lpxK	4079546..4080544 (-)	999	WP_416310537.1	tetraacyldisaccharide 4'-kinase	-
SD196_RS18695 (SD196_18655)	-	4080544..4080993 (-)	450	WP_275611022.1	ExbD/TolR family protein	-
SD196_RS18700 (SD196_18660)	exbB	4080990..4081625 (-)	636	WP_275611021.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
SD196_RS18705 (SD196_18665)	comA	4081697..4083907 (-)	2211	WP_416310538.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
SD196_RS18710 (SD196_18670)	-	4084072..4084602 (+)	531	WP_275611019.1	DUF2062 domain-containing protein	-
SD196_RS18715 (SD196_18675)	-	4084750..4085997 (-)	1248	WP_331319880.1	lipoprotein-releasing ABC transporter permease subunit	-
SD196_RS18720 (SD196_18680)	lolD	4086009..4086707 (-)	699	WP_275611017.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
SD196_RS18725 (SD196_18685)	-	4086700..4087953 (-)	1254	WP_275611016.1	lipoprotein-releasing ABC transporter permease subunit	-
SD196_RS18730 (SD196_18690)	-	4088078..4088653 (+)	576	WP_416310539.1	PilZ domain-containing protein	-

Sequence

Protein

• Length: 736 a.a.
• Molecular weight: 79182.86 Da
• Isoelectric Point: 9.1902

>NTDB_id=902542 SD196_RS18705 WP_416310538.1 4081697..4083907(-) (comA) [Pseudomonas sp. W03]
MFALALGLLALRGLPVLPPAWALLLLAALGLPLLFTRGYLIGLFLLGFAWACQSAQWALDDRLAVALDGRTLWLEGRVEG
LPDRSGPSVRFMLADVSSPRAQVPGTLRLSWFGGPPVEGGERWRLAVKLKRPHGMANGAGFDYEAWLTAQRIGATGSVKD
GQRLQSASGPPAWREAWRQRLLAVDAHGRSGALAALVLGDASGLTTADWQVLQDTGTLHLMVISGSHISLLAGLLYALVA
GLARFGIWPPRLPWLPCACLLAALGAWAYSLMAGFEVPLQRACIMVSIVLLWRLRYRHSGLWTPLLGALLAVLLAEPLVV
LLPGFWLSYAAVALLIFGFSGRLGRWTAWRTWLRAQWLMAIGLLPASIALGLPLSVSGVLANLIAVPWVEMLVVPLALLG
SLALGIPWLGEALLWVSGGLLELLFQLLGWMAALAPAWQPVAAPAWALLLAMLGALVLLAPSGVPLRALGLVMFLPVFWP
SIALPPPGVAEVRVLDVGQGLSVMIRTRSRAWLYDTGARNGDFDIGERVVVPTLRSLGIGHLDLLMLSHADNDHAGGALA
VKKSLRPAQVISGEPDRLSPELGAQPCRKQRWVIDGVNFESWAWDVARESNDRSCVLQIEADGERLLLTGDLPQSGELAW
LAAHPDVRVDWLLAGHHGSRSSSGPAFVRAVSPSAAIISRGANNPYGHPHPSVVERFRALGIRIHDTAQEGALTLMLGAH
GELRGVREGAHFWQEK

Nucleotide

• Length: 2211 bp

>NTDB_id=902542 SD196_RS18705 WP_416310538.1 4081697..4083907(-) (comA) [Pseudomonas sp. W03]
ATGTTTGCGCTGGCCCTCGGATTGTTGGCGCTGCGCGGGTTGCCGGTGCTTCCGCCCGCTTGGGCTCTGTTGCTCCTGGC
GGCGCTGGGGTTGCCCTTGCTGTTCACTCGCGGCTATCTCATCGGCCTGTTCCTGCTGGGGTTCGCCTGGGCCTGCCAGT
CGGCCCAGTGGGCGCTGGATGACCGGCTGGCCGTGGCGCTCGACGGCCGCACGCTGTGGCTGGAGGGCAGGGTAGAGGGA
CTGCCGGATCGCTCCGGGCCCTCGGTGCGCTTCATGCTTGCCGATGTCTCCAGCCCTCGTGCGCAGGTGCCAGGGACGCT
GCGTCTGTCCTGGTTCGGCGGCCCGCCGGTGGAAGGCGGCGAGCGTTGGCGCCTGGCAGTGAAGCTCAAGCGCCCACACG
GTATGGCCAACGGCGCCGGCTTCGACTACGAGGCCTGGCTCACCGCGCAGCGGATCGGCGCTACCGGCAGCGTGAAGGAC
GGGCAGCGATTGCAGTCGGCCAGCGGCCCTCCGGCCTGGCGTGAAGCCTGGCGGCAGCGCTTGCTGGCGGTGGATGCCCA
TGGCCGATCCGGTGCCCTGGCGGCGCTGGTGCTGGGGGATGCGTCCGGTCTGACCACGGCGGACTGGCAGGTGTTGCAGG
ACACCGGAACCCTGCACCTGATGGTGATTTCCGGCTCGCACATTTCCCTGCTGGCCGGTCTGCTCTATGCCTTGGTCGCC
GGGCTGGCGCGCTTCGGCATCTGGCCCCCGCGCCTGCCCTGGCTGCCCTGCGCCTGCCTGCTGGCGGCACTCGGGGCCTG
GGCCTACAGCCTGATGGCGGGGTTCGAGGTGCCGCTGCAGCGCGCCTGCATCATGGTCTCGATCGTCCTGCTGTGGCGTC
TGCGATACCGCCATAGTGGTTTGTGGACGCCGCTGCTGGGAGCCTTGCTGGCGGTGCTGCTGGCCGAGCCGCTGGTGGTG
CTGTTGCCCGGCTTCTGGCTGTCCTATGCGGCGGTGGCGCTGCTGATTTTCGGCTTTTCCGGTCGACTGGGGCGCTGGAC
GGCCTGGCGTACCTGGTTGCGCGCGCAGTGGCTGATGGCGATCGGGTTGCTGCCTGCGTCCATTGCGCTCGGCCTGCCGC
TGAGTGTTTCCGGGGTGCTCGCCAACCTGATCGCTGTGCCCTGGGTGGAAATGCTGGTGGTGCCCCTGGCTCTGCTGGGC
AGCCTGGCGTTGGGTATTCCCTGGCTGGGCGAGGCTTTGCTCTGGGTGTCAGGCGGGTTGCTGGAGCTGTTGTTCCAGCT
GCTGGGCTGGATGGCCGCCTTGGCGCCTGCCTGGCAGCCGGTCGCCGCTCCGGCCTGGGCGCTGCTGTTGGCGATGCTGG
GCGCGCTGGTACTGCTGGCGCCGTCCGGAGTGCCGCTGCGCGCGCTCGGGTTGGTGATGTTCCTGCCGGTGTTCTGGCCG
TCCATTGCTCTGCCGCCGCCCGGTGTGGCCGAGGTTCGGGTACTGGATGTGGGGCAGGGGCTTTCCGTGATGATCCGTAC
CCGCAGTCGGGCCTGGCTCTACGACACCGGTGCGCGCAATGGCGACTTCGATATCGGCGAGCGCGTCGTCGTACCGACGC
TGCGGAGCCTGGGAATCGGTCATCTCGACCTGCTGATGCTCAGCCATGCCGATAACGACCACGCCGGTGGCGCCCTGGCG
GTGAAGAAGTCGCTGCGGCCGGCGCAGGTGATCAGCGGCGAGCCGGATCGCCTGTCTCCCGAGTTGGGGGCCCAGCCTTG
CCGGAAGCAGCGCTGGGTCATCGATGGGGTGAACTTCGAGAGCTGGGCCTGGGATGTTGCCCGGGAAAGCAATGATCGCT
CCTGCGTTCTCCAGATCGAAGCCGACGGCGAACGCCTGCTGCTGACCGGCGACCTGCCGCAATCCGGTGAACTGGCCTGG
CTGGCCGCGCACCCGGATGTCCGAGTCGACTGGCTGCTGGCCGGTCACCACGGTAGCCGCAGTTCGTCCGGGCCAGCTTT
CGTACGGGCGGTGTCGCCATCCGCCGCGATTATTTCCCGCGGCGCCAACAACCCCTACGGCCATCCCCATCCGTCGGTCG
TCGAGCGCTTCCGTGCACTCGGCATCCGGATTCACGATACGGCCCAGGAAGGCGCGCTGACGCTGATGCTCGGTGCCCAT
GGCGAGCTCCGGGGAGTGCGGGAAGGTGCACATTTCTGGCAGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (19-163)

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-678)

• Competence protein (Competence) (196-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	59.72	97.147	0.58
comA	Ralstonia pseudosolanacearum GMI1000	34.653	100	0.38