Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   SD196_RS18700 Genome accession   NZ_CP138377
Coordinates   4080990..4081625 (-) Length   211 a.a.
NCBI ID   WP_275611021.1    Uniprot ID   -
Organism   Pseudomonas sp. W03     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4075990..4086625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD196_RS18670 (SD196_18630) murB 4077057..4078076 (-) 1020 WP_416310535.1 UDP-N-acetylmuramate dehydrogenase -
  SD196_RS18675 (SD196_18635) - 4078073..4078537 (-) 465 WP_275611025.1 low molecular weight protein-tyrosine-phosphatase -
  SD196_RS18680 (SD196_18640) kdsB 4078537..4079301 (-) 765 WP_416310536.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SD196_RS18685 (SD196_18645) - 4079306..4079491 (-) 186 WP_009621404.1 Trm112 family protein -
  SD196_RS18690 (SD196_18650) lpxK 4079546..4080544 (-) 999 WP_416310537.1 tetraacyldisaccharide 4'-kinase -
  SD196_RS18695 (SD196_18655) - 4080544..4080993 (-) 450 WP_275611022.1 ExbD/TolR family protein -
  SD196_RS18700 (SD196_18660) exbB 4080990..4081625 (-) 636 WP_275611021.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SD196_RS18705 (SD196_18665) comA 4081697..4083907 (-) 2211 WP_416310538.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SD196_RS18710 (SD196_18670) - 4084072..4084602 (+) 531 WP_275611019.1 DUF2062 domain-containing protein -
  SD196_RS18715 (SD196_18675) - 4084750..4085997 (-) 1248 WP_331319880.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22973.25 Da        Isoelectric Point: 7.2806

>NTDB_id=902541 SD196_RS18700 WP_275611021.1 4080990..4081625(-) (exbB) [Pseudomonas sp. W03]
MWELVKAGGWMMLPIMLSSVAAMAIIAERLWTLRLSRVAPPQLLGQVWKQIKDKKMNSQALKDLRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPMLAGGISKALITTAS
GLIVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVTQGDREVDFAEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=902541 SD196_RS18700 WP_275611021.1 4080990..4081625(-) (exbB) [Pseudomonas sp. W03]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATGCTGAGCTCCGTCGCTGCCATGGCGATCATCGC
CGAACGTCTCTGGACCCTGCGCTTGAGCCGCGTGGCCCCGCCGCAACTGCTCGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGATGAACAGCCAGGCCCTGAAGGACCTGCGTGCGTCGTCCCCGCTGGGTGAAATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATTGAGGAAGCCGCATCCCGCGTCATCCATGAACTCGAGCGCTACCT
CAATGCGCTGGGCACCATCGCCGCCATGGCCCCGCTGCTCGGCCTGCTGGGTACCGTGTTTGGCATGATCCAGATCTTCA
GCGCCTTCATGGGTGACGGCATGGCCAACGCGCCGATGCTCGCCGGCGGTATCTCCAAGGCCCTGATCACCACCGCTTCG
GGCTTGATCGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGCCGCGTCGATGAACTGGTCATCGCCATGGA
GCAGGAAGCCATCAAGCTGGTGGAAGTGACCCAGGGCGATCGCGAAGTCGATTTCGCCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81