Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SD196_RS04540 Genome accession   NZ_CP138377
Coordinates   958997..960337 (-) Length   446 a.a.
NCBI ID   WP_275610251.1    Uniprot ID   -
Organism   Pseudomonas sp. W03     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 953997..965337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD196_RS04510 (SD196_04510) - 954503..955129 (-) 627 WP_343575001.1 PilX N-terminal domain-containing pilus assembly protein -
  SD196_RS04515 (SD196_04515) - 955126..955974 (-) 849 WP_331318228.1 PilW family protein -
  SD196_RS04520 (SD196_04520) pilV 955971..956531 (-) 561 WP_275610247.1 type IV pilus modification protein PilV -
  SD196_RS04525 (SD196_04525) - 956540..957022 (-) 483 WP_343574996.1 GspH/FimT family pseudopilin -
  SD196_RS04530 (SD196_04530) - 957173..957685 (-) 513 WP_343574994.1 GspH/FimT family pseudopilin -
  SD196_RS04535 (SD196_04535) thiO 957875..958984 (+) 1110 WP_275610250.1 glycine oxidase ThiO -
  SD196_RS04540 (SD196_04540) pilR 958997..960337 (-) 1341 WP_275610251.1 sigma-54-dependent transcriptional regulator Regulator
  SD196_RS04545 (SD196_04545) pilS 960353..961942 (-) 1590 WP_275610252.1 ATP-binding protein Regulator
  SD196_RS04550 (SD196_04550) - 961932..962168 (-) 237 WP_275610253.1 PP0621 family protein -
  SD196_RS04555 (SD196_04555) - 962306..963331 (-) 1026 WP_275610254.1 outer membrane protein assembly factor BamD -
  SD196_RS04560 (SD196_04560) rluD 963481..964440 (+) 960 WP_275610255.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SD196_RS04565 (SD196_04565) pgeF 964437..965162 (+) 726 WP_343574985.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49832.07 Da        Isoelectric Point: 5.6471

>NTDB_id=902527 SD196_RS04540 WP_275610251.1 958997..960337(-) (pilR) [Pseudomonas sp. W03]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREFLAREPFDFCLTDMRLPDGTGLDLVQYIQQRHPQTPVAM
ITAFGSLDTAVQALKAGAFDFLTKPVDLGRLRELVSTALRLRFPDAEEAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRANIAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQENSVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LQRLAGDAGLPVATVSPDALEKLKSYRFPGNVRELENMLERAYTLCENDVIQPQDLRLAETSTGGDNGGQASLAQIDNLE
DYLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=902527 SD196_RS04540 WP_275610251.1 958997..960337(-) (pilR) [Pseudomonas sp. W03]
ATGAGTCGTCAAAAAGCCCTGATCGTCGATGACGAACCCGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGATACCCGCAGCGCCCGTAACGTCAAGGAAGCGCGCGAATTCCTGGCCCGCGAGCCGTTCGACTTCTGCCTCACCG
ACATGCGCCTGCCCGACGGCACCGGGCTGGATCTGGTGCAGTACATCCAGCAGCGCCATCCGCAAACCCCGGTGGCGATG
ATCACCGCCTTCGGCAGCCTGGACACCGCCGTGCAGGCACTCAAGGCCGGCGCCTTTGACTTCCTCACCAAGCCGGTCGA
CCTGGGACGCCTGCGCGAGCTGGTCAGCACGGCGCTGCGCCTGCGCTTCCCCGATGCCGAAGAGGCACCGGTGGACAACC
GACTGCTGGGCGACTCGCCCCCTATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCACCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTCGCCCGACTGATCCATGAACAGGGCCCGCGCGCCAATATCGCCTT
CGTCCCGGTGAACTGCGGCGCGATTCCTTCGGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGTAGCTTCACCG
GCGCCGTGGAGGACAAGCAGGGGCTGTTCCAGGCCGCCAACGGCGGCACCCTGTTCCTCGACGAGGTTGCCGACCTGCCC
CTGCCCATGCAGGTCAAACTGCTGCGGGCGATCCAGGAGAAGGCCGTGCGCGCCGTCGGCGGCCAACAGGAAAACTCAGT
GGACGTGCGCGTCCTCTGTGCAACCCACAAGGACCTCGCGGCGGAAGTCGCCGCCGGCCGTTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAACTGCGCGTCCCGCCGTTGCGCGAGCGCCGCGAGGACATTCCGCTGCTCACCGAACGCGTA
CTCCAGCGCCTGGCCGGCGATGCCGGGCTGCCCGTGGCGACAGTCAGCCCGGACGCCTTGGAGAAGCTCAAGAGCTACCG
CTTCCCCGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACCCTGTGCGAGAACGATGTGATCCAGCCGC
AGGACCTGCGCCTGGCCGAAACCAGCACCGGTGGCGACAATGGCGGGCAGGCCAGTCTCGCGCAGATCGACAACCTCGAG
GACTACCTGGAGGAGATCGAGCGCAAGCTGATCATGCAGGCCCTCGAAGAGACCCGCTGGAACCGCACCGCGGCAGCACA
GCGACTCGGGCTCACCTTCCGCTCGATGCGTTATCGGTTGAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.789

100

0.888
  pilR Acinetobacter baumannii strain A118

49.565

100

0.511