Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SD196_RS04545 Genome accession   NZ_CP138377
Coordinates   960353..961942 (-) Length   529 a.a.
NCBI ID   WP_275610252.1    Uniprot ID   -
Organism   Pseudomonas sp. W03     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 955353..966942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD196_RS04520 (SD196_04520) pilV 955971..956531 (-) 561 WP_275610247.1 type IV pilus modification protein PilV -
  SD196_RS04525 (SD196_04525) - 956540..957022 (-) 483 WP_343574996.1 GspH/FimT family pseudopilin -
  SD196_RS04530 (SD196_04530) - 957173..957685 (-) 513 WP_343574994.1 GspH/FimT family pseudopilin -
  SD196_RS04535 (SD196_04535) thiO 957875..958984 (+) 1110 WP_275610250.1 glycine oxidase ThiO -
  SD196_RS04540 (SD196_04540) pilR 958997..960337 (-) 1341 WP_275610251.1 sigma-54-dependent transcriptional regulator Regulator
  SD196_RS04545 (SD196_04545) pilS 960353..961942 (-) 1590 WP_275610252.1 ATP-binding protein Regulator
  SD196_RS04550 (SD196_04550) - 961932..962168 (-) 237 WP_275610253.1 PP0621 family protein -
  SD196_RS04555 (SD196_04555) - 962306..963331 (-) 1026 WP_275610254.1 outer membrane protein assembly factor BamD -
  SD196_RS04560 (SD196_04560) rluD 963481..964440 (+) 960 WP_275610255.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SD196_RS04565 (SD196_04565) pgeF 964437..965162 (+) 726 WP_343574985.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58709.90 Da        Isoelectric Point: 7.3615

>NTDB_id=902528 SD196_RS04545 WP_275610252.1 960353..961942(-) (pilS) [Pseudomonas sp. W03]
MATEGISLTGQGRRVLRLYHLYRLTIGLVLVLLISSNLDGEVLKLAHTELFHIGCWTYLVVNILIAVLMPAPRHLMPLFI
LAALDVLMLSGLFYTAGGVPSGIGTLMVIAVAIANILLRGRIGLLIAALASIGLIYLTFYISLTQEIAFNHYVQAGGLGA
LCFASALLIQALARRQQVIENLAEQRAATVANLEELNALILQRMRTGILVLDDQQRVLLANQSATTLLGGQELTGQPLAE
HSPALLNSLRLWQQNPALRPPSLQPHDTAPSVQPAFIPLHRGNEQHTLMFLEDISQIAQQAQQLKLASLGRLTAGIAHEI
RNPLGAISHAAQLLLESEELDPPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQALDLKYWLQRFVDEQREGLRENQ
QLHVETGPGAVQTRMDPHQLTQVLTNLVQNGLRYSAKKNGTGQVWLRLFRDSETDLPILEVLDDGQGIAAEQRGRLFEPF
FTTESKGTGLGLYISRELCESNQARLDYKTRDEGGSCFRLTFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=902528 SD196_RS04545 WP_275610252.1 960353..961942(-) (pilS) [Pseudomonas sp. W03]
GTGGCCACTGAAGGCATTTCGCTCACCGGGCAGGGACGGCGCGTCCTGCGCCTGTATCACCTGTACCGCCTGACCATCGG
TCTGGTCCTGGTACTGCTGATTTCCAGCAACCTTGACGGCGAAGTCCTCAAGCTCGCCCACACCGAACTGTTCCACATCG
GCTGCTGGACCTACCTGGTGGTGAACATCCTGATCGCCGTCCTGATGCCGGCGCCCCGGCATCTGATGCCGCTGTTCATC
CTGGCGGCACTCGACGTGCTGATGCTCAGCGGGCTGTTCTACACCGCCGGCGGCGTCCCCAGCGGTATCGGCACGCTGAT
GGTGATCGCCGTCGCCATCGCCAACATCCTGCTGCGCGGCCGGATAGGCCTTTTGATCGCCGCATTGGCGTCCATCGGGC
TGATCTACCTGACCTTCTACATCAGCCTTACCCAGGAGATCGCCTTCAACCACTATGTACAGGCCGGCGGGCTGGGCGCC
CTGTGCTTCGCCTCGGCGCTGCTGATCCAGGCGCTGGCGCGCCGCCAACAGGTCATCGAAAACCTCGCGGAACAACGGGC
CGCCACGGTAGCCAACCTCGAAGAACTCAACGCCCTGATCCTCCAGCGCATGCGTACCGGCATCCTTGTGCTGGACGATC
AGCAGCGCGTGCTGCTGGCCAACCAGAGCGCCACCACACTGCTCGGCGGACAGGAACTGACAGGGCAGCCGCTGGCCGAG
CACAGCCCGGCGCTGCTCAACAGCCTGCGGCTGTGGCAGCAGAACCCCGCCCTGCGGCCCCCCAGCCTGCAACCACACGA
CACCGCGCCCAGCGTGCAGCCTGCCTTCATCCCCCTGCACCGCGGCAATGAACAGCACACCCTGATGTTCCTCGAGGACA
TCTCGCAGATCGCCCAGCAGGCTCAGCAGCTCAAGCTCGCCTCGCTCGGCCGCCTGACCGCCGGCATCGCCCATGAGATC
CGCAACCCCCTGGGCGCCATCAGCCACGCCGCGCAATTGCTGCTGGAGTCCGAAGAGCTCGATCCGCCGGATCGACGACT
GACACAGATCATCCAGGACCAGTCGCGGCGGATGAACCTGGTGATCGAGAACGTGCTACAGCTTTCCCGCCGACGCCAGG
CGGAACCCCAAGCGCTCGACCTGAAATACTGGCTGCAACGTTTCGTCGACGAACAGCGTGAGGGGCTGCGCGAAAACCAG
CAGCTGCATGTCGAAACCGGGCCCGGCGCTGTGCAGACGCGCATGGACCCGCATCAGCTGACGCAGGTGCTGACCAATCT
GGTCCAGAATGGGTTACGGTACAGCGCCAAGAAAAACGGCACTGGCCAGGTGTGGTTGCGCCTGTTCCGCGACAGCGAAA
CCGACCTGCCGATCCTGGAAGTCCTCGACGATGGCCAGGGCATTGCTGCGGAGCAGCGGGGGAGGCTGTTCGAGCCGTTC
TTCACCACCGAAAGCAAGGGCACAGGTCTTGGGCTGTACATCTCCCGGGAGCTCTGTGAAAGCAACCAGGCGCGCCTGGA
CTATAAAACGCGTGACGAGGGTGGCAGTTGCTTCCGCCTCACCTTCGCCCATCCACGCAAACAAAGCTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

72.254

98.11

0.709