Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   M2497_RS18730 Genome accession   NZ_AP025169
Coordinates   4188968..4191193 (-) Length   741 a.a.
NCBI ID   WP_248482261.1    Uniprot ID   -
Organism   Pseudomonas sp. CYM-20-01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4183968..4196193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2497_RS18695 (cym2001_36920) murB 4184364..4185383 (-) 1020 WP_248482255.1 UDP-N-acetylmuramate dehydrogenase -
  M2497_RS18700 (cym2001_36930) - 4185380..4185844 (-) 465 WP_248482257.1 low molecular weight protein-tyrosine-phosphatase -
  M2497_RS18705 (cym2001_36940) kdsB 4185844..4186608 (-) 765 WP_058425434.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M2497_RS18710 (cym2001_36950) - 4186605..4186790 (-) 186 WP_003174668.1 Trm112 family protein -
  M2497_RS18715 (cym2001_36960) lpxK 4186814..4187824 (-) 1011 WP_248482259.1 tetraacyldisaccharide 4'-kinase -
  M2497_RS18720 (cym2001_36970) - 4187824..4188252 (-) 429 WP_058425436.1 biopolymer transporter ExbD -
  M2497_RS18725 (cym2001_36980) exbB 4188249..4188884 (-) 636 WP_058425437.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  M2497_RS18730 (cym2001_36990) comA 4188968..4191193 (-) 2226 WP_248482261.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M2497_RS18735 (cym2001_37000) - 4191329..4191844 (+) 516 WP_058425439.1 DUF2062 domain-containing protein -
  M2497_RS18740 (cym2001_37010) - 4191841..4193211 (-) 1371 WP_248482263.1 sensor histidine kinase -
  M2497_RS18745 (cym2001_37020) - 4193198..4193926 (-) 729 WP_248482266.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80668.61 Da        Isoelectric Point: 10.6994

>NTDB_id=90226 M2497_RS18730 WP_248482261.1 4188968..4191193(-) (comA) [Pseudomonas sp. CYM-20-01]
MKTGMCAFALGLLALRFLPVLPPMEWLIATPVLALMLLPFRTYPLAFFLLGLSWACLSAQWALDDRLIPALDGQTRWLEG
RVIGLPRQTGEGVRFELADSRSRNARLPKRIRVSWRGGPPVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLAPARNAWRDSVRQRLMAVDAQGREAGLVALVLGDGSGLATADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFSAALGYGWLAGFGVPVQRACVMVGLVLVWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLWVLGLPISLSAPLANLVAVPWISLVVLPLTL
SGTALLPLPYIGEGLLWLAGGALDGLFKGLAWLAGHMPAWIPAQVPLGYWLVSLLGAVLLLLPNGVPFRTLGWPMLLLAV
FPPREQVPHGQVEVVQLDVGQGQSLILRTRHHALLYDAGPRTGTFDLGARVVLPSLRKLGVGALDLMLLSHADADHAGGA
AAIAKGIPIKRVVGGETDGLPAFIGTQPCVSGERWTWDGVTFELWQWPGAISGNAKSCVLQVQANGERLLLTGDIDRDAE
QAMLASSLAVPTAWLQAPHHGSRSSSSWAFVERLSPRNVLISRGRGNAFGHPHPQVMERYQRLGSQVYDSAEQGAVRVQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=90226 M2497_RS18730 WP_248482261.1 4188968..4191193(-) (comA) [Pseudomonas sp. CYM-20-01]
ATGAAGACAGGGATGTGCGCGTTTGCGCTGGGGTTGCTGGCCCTGCGCTTTTTGCCGGTGTTGCCGCCTATGGAATGGCT
GATTGCCACGCCGGTGCTGGCGTTGATGTTGTTGCCGTTTCGTACCTACCCACTGGCGTTTTTCCTGCTGGGGCTGAGTT
GGGCATGCCTCAGCGCACAGTGGGCATTGGATGATCGCCTGATACCTGCACTGGACGGCCAGACGCGCTGGCTGGAGGGG
CGGGTGATCGGGTTGCCGCGACAGACGGGCGAGGGTGTGCGCTTCGAACTGGCCGATAGTCGGTCGCGAAATGCCCGCTT
ACCCAAACGCATCCGCGTGTCCTGGCGTGGCGGGCCGCCGGTGCGCAGCGGTGAACGTTGGCGCCTGGCGGTTACCCTCA
AACGTCCGGCCGGGTTGCTGAATTTCCACGGGTTTGATCAGGAAGCCTGGCTGTTGGCCCAACGCATCGGCGCCACGGGC
TCGGTCAAGGACGGCGAGCGTCTGGCGCCGGCCCGCAATGCCTGGCGCGACAGCGTGCGTCAGCGCCTTATGGCGGTGGA
CGCCCAAGGTCGGGAAGCCGGCCTGGTTGCCCTGGTGCTGGGGGATGGTTCAGGGCTGGCCACTGCCGATTGGCAAGTGT
TGCAGGATACGGGCACCGTGCATCTGCTGGTCATCTCCGGCCAGCACATCGGTTTGCTGGCGGGTTTGATCTATGGGCTG
ATCGCCGGCTTGGCCCGCTACGGTTGCTGGCCGCGAACCTGGCCGTGGTTGCCCTGGGCGTGTGGCCTGGCGTTCAGCGC
TGCGTTGGGCTACGGCTGGCTCGCAGGGTTTGGCGTGCCAGTACAGCGGGCCTGCGTGATGGTCGGGTTGGTGTTGGTGT
GGCGGCTGCGCTTCCGGCATCTGGGCCTATGGTGGCCGTTGTTGCTGGCACTCAATGGTGTGTTGGTGCTGGAACCGTTG
GCCAGTTTGCAGCCAGGGTTCTGGCTGTCGTTTGCGGCGGTGGCAGTGCTGATTCTGGCGTTTGGTGGGCGGTTGGGGCC
GTGGAGCCTGTGGCAGGCATGGACCCGACCTCAGTGGCTGATTGCCATTGGATTGTTTCCGGTGTTGTGGGTGCTGGGAC
TGCCCATCAGCCTGAGCGCACCGCTGGCCAACCTCGTGGCTGTGCCATGGATCAGCCTGGTGGTGTTGCCGCTGACGCTA
TCGGGGACTGCATTACTGCCATTGCCATATATTGGCGAAGGTCTTCTGTGGCTGGCGGGCGGCGCGCTGGATGGCTTGTT
CAAGGGGCTGGCGTGGCTCGCCGGACACATGCCGGCCTGGATCCCGGCGCAAGTACCTTTGGGGTATTGGCTGGTGAGCC
TGTTGGGGGCCGTGTTGCTTCTGCTGCCCAACGGCGTGCCCTTTCGCACGCTGGGCTGGCCGATGTTGCTACTGGCGGTG
TTTCCCCCGCGAGAGCAGGTGCCCCACGGGCAGGTGGAGGTGGTGCAGTTGGACGTCGGGCAAGGGCAGTCGCTGATTCT
GCGCACGCGCCATCATGCATTGCTTTACGACGCCGGACCGCGCACTGGAACCTTTGATCTCGGCGCGCGGGTGGTGCTGC
CGTCGTTGCGAAAGCTCGGGGTCGGGGCATTGGACCTCATGCTGCTCAGCCACGCCGACGCGGATCATGCCGGTGGTGCG
GCGGCAATTGCCAAGGGCATACCGATCAAGCGTGTGGTGGGCGGAGAAACCGATGGGTTGCCGGCGTTTATCGGTACGCA
ACCCTGCGTCAGTGGCGAACGATGGACCTGGGACGGGGTAACGTTCGAACTGTGGCAGTGGCCTGGCGCCATCAGTGGCA
ATGCAAAGTCCTGCGTCTTGCAGGTGCAGGCCAATGGCGAGCGCCTGTTACTGACCGGCGACATCGACCGCGACGCCGAA
CAGGCCATGCTCGCTTCGTCCCTGGCGGTGCCCACCGCGTGGCTGCAGGCGCCCCACCATGGCAGTCGCAGCTCTTCGTC
CTGGGCGTTTGTCGAGCGGCTCTCTCCGCGCAATGTGCTGATCTCGCGGGGGCGCGGCAATGCGTTCGGCCACCCGCATC
CGCAGGTGATGGAGCGTTATCAACGGTTGGGCAGCCAGGTGTATGACAGCGCAGAGCAGGGGGCCGTGCGTGTGCAACTG
GGAGCATTCGCGCCACCGGTCGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAGCGCTTACCCTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-665)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.278

97.166

0.586
  comA Ralstonia pseudosolanacearum GMI1000

35.081

100

0.379

Multiple sequence alignment