Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   M2497_RS18725 Genome accession   NZ_AP025169
Coordinates   4188249..4188884 (-) Length   211 a.a.
NCBI ID   WP_058425437.1    Uniprot ID   A0A1H0L153
Organism   Pseudomonas sp. CYM-20-01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4183249..4193884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2497_RS18690 (cym2001_36910) - 4183629..4184300 (+) 672 WP_016977342.1 Bax inhibitor-1/YccA family protein -
  M2497_RS18695 (cym2001_36920) murB 4184364..4185383 (-) 1020 WP_248482255.1 UDP-N-acetylmuramate dehydrogenase -
  M2497_RS18700 (cym2001_36930) - 4185380..4185844 (-) 465 WP_248482257.1 low molecular weight protein-tyrosine-phosphatase -
  M2497_RS18705 (cym2001_36940) kdsB 4185844..4186608 (-) 765 WP_058425434.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M2497_RS18710 (cym2001_36950) - 4186605..4186790 (-) 186 WP_003174668.1 Trm112 family protein -
  M2497_RS18715 (cym2001_36960) lpxK 4186814..4187824 (-) 1011 WP_248482259.1 tetraacyldisaccharide 4'-kinase -
  M2497_RS18720 (cym2001_36970) - 4187824..4188252 (-) 429 WP_058425436.1 biopolymer transporter ExbD -
  M2497_RS18725 (cym2001_36980) exbB 4188249..4188884 (-) 636 WP_058425437.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  M2497_RS18730 (cym2001_36990) comA 4188968..4191193 (-) 2226 WP_248482261.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M2497_RS18735 (cym2001_37000) - 4191329..4191844 (+) 516 WP_058425439.1 DUF2062 domain-containing protein -
  M2497_RS18740 (cym2001_37010) - 4191841..4193211 (-) 1371 WP_248482263.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22859.03 Da        Isoelectric Point: 7.3615

>NTDB_id=90225 M2497_RS18725 WP_058425437.1 4188249..4188884(-) (exbB) [Pseudomonas sp. CYM-20-01]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=90225 M2497_RS18725 WP_058425437.1 4188249..4188884(-) (exbB) [Pseudomonas sp. CYM-20-01]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGGAAAAACTCAAGGAACTGCGCGCCAACTCCCCGTTGGGTGAGATCCTTGCCGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGCGTCATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCATTGCTCGGCTTGCTCGGCACGGTGTTGGGCATGATCGACATTTTCA
GTTCGTTCATGGGCTCCGGCATGACCACCAATGCGGCCGTGCTGGCCGGTGGTATCTCCAAGGCACTGATCACTACGGCC
GCCGGCCTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGGTTCCTGCAACGTCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGTTGGTGGAAGTGGTGCAGGGCGACCGCGATGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H0L153

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment