Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AABK30_RS01805 Genome accession   NZ_AP027783
Coordinates   398452..399084 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 2017-03-3CC     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 393452..404084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK30_RS01780 (VEE74_03510) yhfG 393584..393751 (+) 168 WP_000736860.1 YhfG family protein -
  AABK30_RS01785 (VEE74_03520) fic 393741..394343 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  AABK30_RS01790 (VEE74_03530) pabA 394375..394938 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  AABK30_RS01795 (VEE74_03540) argD 395024..396244 (+) 1221 WP_024249933.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AABK30_RS01800 (VEE74_03550) yhfK 396311..398401 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  AABK30_RS01805 (VEE74_03560) crp 398452..399084 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AABK30_RS01810 (VEE74_03580) yhfA 399386..399790 (+) 405 WP_001148910.1 OsmC family protein -
  AABK30_RS01815 (VEE74_03590) prkB 399845..400714 (-) 870 WP_001274680.1 phosphoribulokinase -
  AABK30_RS01820 (VEE74_03600) yheU 400768..400986 (-) 219 WP_000907085.1 YheU family protein -
  AABK30_RS01825 (VEE74_03610) yheT 400980..402002 (-) 1023 WP_000057379.1 hydrolase -
  AABK30_RS01830 (VEE74_03620) yheS 402002..403915 (-) 1914 WP_000634789.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=90201 AABK30_RS01805 WP_000242755.1 398452..399084(-) (crp) [Escherichia coli strain 2017-03-3CC]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=90201 AABK30_RS01805 WP_000242755.1 398452..399084(-) (crp) [Escherichia coli strain 2017-03-3CC]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467