Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R8Z54_RS11050 Genome accession   NZ_CP138318
Coordinates   2274690..2275781 (-) Length   363 a.a.
NCBI ID   WP_006314063.1    Uniprot ID   A0A3G2CQK8
Organism   Agrobacterium fabrum strain L-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2269690..2280781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8Z54_RS11035 - 2270598..2271224 (+) 627 WP_006314066.1 glutathione S-transferase family protein -
  R8Z54_RS11040 - 2271300..2271683 (-) 384 WP_006314065.1 VOC family protein -
  R8Z54_RS11045 alaS 2271797..2274460 (-) 2664 WP_080808201.1 alanine--tRNA ligase -
  R8Z54_RS11050 recA 2274690..2275781 (-) 1092 WP_006314063.1 recombinase RecA Machinery gene
  R8Z54_RS11055 - 2276028..2276969 (+) 942 WP_080808199.1 carbohydrate kinase family protein -
  R8Z54_RS11060 - 2276998..2277921 (+) 924 WP_006314061.1 pseudouridine-5'-phosphate glycosidase -
  R8Z54_RS11065 - 2278204..2280444 (-) 2241 WP_080811894.1 OmpA family protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38802.23 Da        Isoelectric Point: 4.9684

>NTDB_id=901741 R8Z54_RS11050 WP_006314063.1 2274690..2275781(-) (recA) [Agrobacterium fabrum strain L-11]
MAQNSLRLVEDKSVDKSKALEAALSQIERSFGKGSIMKLGSNENVVEVETVSTGSLSLDIALGIGGLPKGRIIEIYGPES
SGKTTLALQTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLQSLLISQPDTGEQALEITDTLVRSGAVDVLVIDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISKSKCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
AVKEREEVVGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKSGAWFSYNSQRLGQGRENAKTFL
RDNPDTANEIELALRQNAGLIADRFLQNGGPDAGEGDDGSDEG

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=901741 R8Z54_RS11050 WP_006314063.1 2274690..2275781(-) (recA) [Agrobacterium fabrum strain L-11]
ATGGCACAAAATTCTTTGCGTCTCGTAGAGGATAAATCGGTGGATAAAAGCAAGGCACTGGAAGCGGCGCTCTCCCAGAT
CGAACGGTCGTTCGGCAAGGGATCGATCATGAAGCTCGGTTCCAATGAAAATGTGGTTGAAGTGGAAACCGTTTCGACGG
GCTCGCTCAGCCTGGATATCGCGCTCGGCATCGGCGGCTTGCCGAAGGGGCGTATCATTGAGATTTACGGCCCGGAAAGC
TCCGGTAAAACGACGCTTGCGCTGCAGACGATCGCGGAAGCCCAGAAGAAGGGCGGCATCTGCGCCTTTGTGGACGCCGA
ACACGCGCTCGATCCTGTTTATGCCCGCAAGCTCGGTGTGGATTTGCAGAGCCTTCTGATCTCGCAGCCCGATACCGGCG
AGCAGGCGCTTGAGATCACCGATACGCTGGTGCGTTCGGGCGCGGTTGACGTTCTTGTCATCGATTCGGTTGCGGCCTTG
ACGCCGCGGGCGGAAATCGAAGGCGAAATGGGCGATAGCCTGCCGGGTCTTCAGGCCCGTCTGATGAGCCAGGCGCTGCG
CAAGCTGACCGCCTCGATCTCCAAGTCGAAGTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGT
TTGGTTCGCCGGAAACGACGACGGGCGGTAACGCGCTGAAGTTTTACGCCTCCGTGCGCCTCGACATCCGCCGTATCGGC
GCCGTCAAGGAGCGCGAAGAGGTTGTCGGCAACCAGACGCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAA
GCAGGTTGAATTCGACATCATGTATGGCGAAGGTGTTTCCAAGACCGGTGAGCTGGTCGATCTCGGCGTGAAGGCCGGTA
TCGTCGAGAAGTCCGGCGCCTGGTTCTCCTATAATAGTCAGCGTCTGGGGCAGGGGCGTGAAAACGCCAAGACCTTCCTG
CGCGACAATCCGGATACGGCCAATGAGATCGAACTGGCGCTGCGCCAGAATGCCGGTCTGATTGCCGACCGCTTCCTGCA
GAATGGTGGCCCGGACGCCGGTGAAGGCGACGACGGGAGCGACGAGGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G2CQK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

71.739

88.705

0.636
  recA Acinetobacter baylyi ADP1

71.429

88.705

0.634
  recA Ralstonia pseudosolanacearum GMI1000

72.611

86.501

0.628
  recA Vibrio cholerae strain A1552

70.807

88.705

0.628
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.807

88.705

0.628
  recA Glaesserella parasuis strain SC1401

66.181

94.49

0.625
  recA Neisseria gonorrhoeae MS11

69.04

88.981

0.614
  recA Neisseria gonorrhoeae MS11

69.04

88.981

0.614
  recA Neisseria gonorrhoeae strain FA1090

69.04

88.981

0.614
  recA Pseudomonas stutzeri DSM 10701

69.47

88.43

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

89.807

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

90.083

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.138

90.083

0.587
  recA Helicobacter pylori strain NCTC11637

64.417

89.807

0.579
  recA Helicobacter pylori 26695

64.11

89.807

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.038

87.328

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

62.27

89.807

0.559
  recA Streptococcus mitis SK321

61.329

91.185

0.559
  recA Streptococcus mitis NCTC 12261

61.329

91.185

0.559
  recA Streptococcus pneumoniae Rx1

61.027

91.185

0.556
  recA Streptococcus pneumoniae TIGR4

61.027

91.185

0.556
  recA Streptococcus pneumoniae D39

61.027

91.185

0.556
  recA Streptococcus pneumoniae R6

61.027

91.185

0.556
  recA Lactococcus lactis subsp. cremoris KW2

59.76

91.736

0.548
  recA Streptococcus pyogenes NZ131

60.486

90.634

0.548
  recA Streptococcus mutans UA159

59.819

91.185

0.545