Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   SC318_RS15635 Genome accession   NZ_CP138214
Coordinates   3494743..3496968 (-) Length   741 a.a.
NCBI ID   WP_320427527.1    Uniprot ID   -
Organism   Pseudomonas sp. MUP55     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3489743..3501968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC318_RS15600 (SC318_15600) murB 3490112..3491131 (-) 1020 WP_320427520.1 UDP-N-acetylmuramate dehydrogenase -
  SC318_RS15605 (SC318_15605) - 3491128..3491592 (-) 465 WP_320427521.1 low molecular weight protein-tyrosine-phosphatase -
  SC318_RS15610 (SC318_15610) kdsB 3491592..3492356 (-) 765 WP_320427522.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SC318_RS15615 (SC318_15615) - 3492353..3492538 (-) 186 WP_003174668.1 Trm112 family protein -
  SC318_RS15620 (SC318_15620) lpxK 3492563..3493573 (-) 1011 WP_320427525.1 tetraacyldisaccharide 4'-kinase -
  SC318_RS15625 (SC318_15625) - 3493573..3494001 (-) 429 WP_320427526.1 biopolymer transporter ExbD -
  SC318_RS15630 (SC318_15630) exbB 3493998..3494633 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SC318_RS15635 (SC318_15635) comA 3494743..3496968 (-) 2226 WP_320427527.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SC318_RS15640 (SC318_15640) - 3497104..3497619 (+) 516 WP_320427528.1 DUF2062 domain-containing protein -
  SC318_RS15645 (SC318_15645) - 3497623..3498981 (-) 1359 WP_320427529.1 sensor histidine kinase -
  SC318_RS15650 (SC318_15650) - 3498968..3499696 (-) 729 WP_320427530.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80465.38 Da        Isoelectric Point: 10.3790

>NTDB_id=901462 SC318_RS15635 WP_320427527.1 3494743..3496968(-) (comA) [Pseudomonas sp. MUP55]
MRTGMFALALGLLTLRFLPALPATGWLLAMVVLALMLLPFRTYPLAFFLLGLSWACISAQWALDDRLQPTLDGETRWLEA
RVVGLPQQTDTGVRFELADSRSRKARLPKRIRVSWHGGPAVRSGERWRLAVTLKRPSGLLNFHGFDHEAWLLAQRMGATG
SVKDGERLAPARNAWRDGLRQRLLATDAQGREAAVAALVLGDGSGLEAQEWQVVQDTGTVHLLVISGQHIGLLAGLIYGL
LAGLARYGCWPRTLPWLPWACGMAFAAALSYGLLAGFGVPVQRACVMVGLVLLWRLRFQHLGAWWPLLLAFNGVLLLEPL
ASLQPGFWLSFAAVAILVLTFGGRLGPWSVWQAWTRPQWLIAIGLFPLLLVLGLPISLTAPVANLFAVPWISLVVLPLAL
LGTALLWLPVIGDGLIWLAGGALEAWFKVLALLGGQLPAWTPAEVPLACWLVSLAGAVLLLLPNGVPFRLLGWPMLLLAV
FPPRDPIPHGQVTVVQLDVGQGQAVILRTRNHALLYDAGPRSGSLDLGARVVLPSLKKFGIERLDMMLLSHADADHAGGA
AAVARGVPITRVVGGETEGLPAFLKTEPCISGERWEWDGVSFVLWQWVDAISGNSKSCVLQVVAGGERLLLTGDIDRAAE
RALLDTSLAVPTDWLQAPHHGSRSSSSRPFVQRLAPKSVLISRGRGNAFGHPHSQVLERYQALGSRIHDSAEQGAVRVQL
GAFEPAVVARSQRRFWREPLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=901462 SC318_RS15635 WP_320427527.1 3494743..3496968(-) (comA) [Pseudomonas sp. MUP55]
ATGAGGACAGGGATGTTCGCGCTTGCGCTGGGGTTGCTGACCCTGCGTTTTCTACCGGCATTGCCGGCCACCGGATGGCT
GTTGGCCATGGTCGTGTTGGCATTGATGTTGTTGCCGTTTCGTACCTATCCGCTGGCGTTCTTCCTGCTGGGTTTGAGTT
GGGCCTGCATCAGCGCGCAGTGGGCACTGGATGATCGATTGCAACCGACGCTGGACGGCGAGACGCGCTGGCTGGAGGCG
CGCGTGGTCGGTTTGCCCCAGCAGACGGACACGGGCGTACGCTTTGAGCTGGCTGACAGTCGGTCGCGCAAGGCCAGGCT
ACCCAAGCGCATCCGTGTGTCCTGGCACGGCGGGCCGGCGGTGCGCAGCGGGGAACGCTGGCGTCTGGCTGTCACCCTCA
AGCGGCCGTCCGGCCTGCTCAATTTCCACGGTTTCGACCACGAGGCCTGGCTGCTGGCGCAGCGCATGGGTGCCACGGGC
TCGGTGAAAGACGGTGAACGCCTGGCGCCGGCCCGCAACGCCTGGCGCGACGGCCTGCGCCAACGCCTGCTGGCTACCGA
TGCGCAAGGCCGTGAAGCCGCAGTGGCGGCGCTGGTGCTGGGGGACGGTTCGGGGCTGGAGGCACAGGAGTGGCAGGTGG
TGCAAGACACCGGCACCGTGCACCTGTTGGTCATTTCCGGGCAGCACATCGGCCTGCTGGCCGGGCTGATCTATGGGCTG
TTGGCGGGGTTGGCGCGTTATGGCTGCTGGCCACGAACCCTGCCATGGCTGCCTTGGGCGTGTGGCATGGCTTTCGCAGC
CGCCTTGAGTTATGGCCTGCTGGCGGGTTTCGGCGTGCCCGTGCAGCGGGCCTGCGTGATGGTTGGTCTGGTGCTGCTAT
GGCGGCTGCGCTTTCAGCATCTGGGCGCCTGGTGGCCGCTGTTGCTGGCGTTCAACGGCGTACTGCTGCTTGAGCCGTTG
GCCAGTCTGCAGCCTGGGTTCTGGTTGTCGTTTGCGGCGGTTGCGATCCTGGTCCTGACGTTCGGCGGACGGCTGGGGCC
ATGGAGCGTCTGGCAGGCATGGACACGTCCGCAGTGGTTGATAGCCATAGGCCTGTTTCCATTGTTGCTGGTGCTGGGGT
TGCCCATCAGCCTTACTGCGCCAGTGGCCAACTTGTTCGCCGTGCCGTGGATCAGCCTGGTGGTGCTGCCGTTGGCGCTG
CTGGGCACGGCGCTGCTGTGGCTGCCGGTGATCGGTGACGGCTTGATCTGGTTGGCCGGTGGGGCGCTGGAAGCCTGGTT
CAAGGTGCTGGCGCTGCTGGGCGGGCAGTTGCCGGCCTGGACGCCGGCTGAAGTGCCGCTGGCGTGTTGGCTGGTGAGCC
TGGCGGGCGCGGTGTTATTGCTGCTCCCCAACGGGGTGCCGTTTCGTTTGCTGGGCTGGCCCATGCTGTTGCTGGCGGTA
TTTCCACCCAGGGACCCGATACCCCATGGGCAGGTGACGGTGGTGCAGCTGGATGTCGGCCAGGGGCAGGCCGTGATCCT
GCGCACCCGCAATCATGCTCTGCTTTACGACGCCGGGCCTCGTTCGGGGTCGCTGGATCTGGGCGCGCGCGTGGTCTTGC
CGTCGTTGAAAAAGTTCGGCATAGAGCGCCTGGACATGATGCTACTGAGCCATGCCGATGCCGATCACGCCGGTGGCGCT
GCAGCTGTCGCCCGTGGGGTGCCCATCACGCGTGTGGTCGGCGGCGAAACCGAGGGGCTGCCGGCTTTTCTGAAGACTGA
GCCTTGTATCAGCGGTGAACGGTGGGAGTGGGATGGCGTGTCGTTCGTCTTATGGCAGTGGGTTGATGCCATCAGTGGTA
ACTCCAAATCCTGTGTGTTGCAGGTGGTGGCAGGCGGCGAACGGCTGCTGCTGACGGGCGATATCGACCGTGCAGCAGAG
CGCGCATTGCTGGATACGTCATTGGCGGTGCCAACCGATTGGCTGCAAGCGCCCCATCATGGTAGCCGCAGCTCGTCATC
CAGACCCTTTGTGCAGCGGCTTGCGCCCAAGTCGGTGCTGATTTCCAGAGGCCGGGGCAACGCCTTCGGTCATCCCCATT
CGCAAGTGCTGGAGCGCTATCAGGCCTTGGGCAGCCGGATACATGACAGCGCCGAACAAGGTGCTGTGCGTGTGCAGTTA
GGGGCGTTCGAGCCCGCCGTTGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAACCGTTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.805

97.031

0.58
  comA Ralstonia pseudosolanacearum GMI1000

35.204

100

0.372