Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   SC318_RS15630 Genome accession   NZ_CP138214
Coordinates   3493998..3494633 (-) Length   211 a.a.
NCBI ID   WP_122676958.1    Uniprot ID   -
Organism   Pseudomonas sp. MUP55     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3488998..3499633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC318_RS15595 (SC318_15595) - 3489365..3490036 (+) 672 WP_053256786.1 Bax inhibitor-1/YccA family protein -
  SC318_RS15600 (SC318_15600) murB 3490112..3491131 (-) 1020 WP_320427520.1 UDP-N-acetylmuramate dehydrogenase -
  SC318_RS15605 (SC318_15605) - 3491128..3491592 (-) 465 WP_320427521.1 low molecular weight protein-tyrosine-phosphatase -
  SC318_RS15610 (SC318_15610) kdsB 3491592..3492356 (-) 765 WP_320427522.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SC318_RS15615 (SC318_15615) - 3492353..3492538 (-) 186 WP_003174668.1 Trm112 family protein -
  SC318_RS15620 (SC318_15620) lpxK 3492563..3493573 (-) 1011 WP_320427525.1 tetraacyldisaccharide 4'-kinase -
  SC318_RS15625 (SC318_15625) - 3493573..3494001 (-) 429 WP_320427526.1 biopolymer transporter ExbD -
  SC318_RS15630 (SC318_15630) exbB 3493998..3494633 (-) 636 WP_122676958.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SC318_RS15635 (SC318_15635) comA 3494743..3496968 (-) 2226 WP_320427527.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SC318_RS15640 (SC318_15640) - 3497104..3497619 (+) 516 WP_320427528.1 DUF2062 domain-containing protein -
  SC318_RS15645 (SC318_15645) - 3497623..3498981 (-) 1359 WP_320427529.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22930.10 Da        Isoelectric Point: 7.3615

>NTDB_id=901461 SC318_RS15630 WP_122676958.1 3493998..3494633(-) (exbB) [Pseudomonas sp. MUP55]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=901461 SC318_RS15630 WP_122676958.1 3493998..3494633(-) (exbB) [Pseudomonas sp. MUP55]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCCATTGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAAGTGTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAGCTCAAGGAGCTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCGCGGGTGATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATTGCCGCGATGGCGCCGCTGCTCGGTTTGCTGGGCACGGTGCTGGGCATGATCGACATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCCGTGCTCGCCGGTGGTATTTCCAAGGCATTGATCACCACCGCT
GCGGGCCTGATGGTGGGTATCCCTTCAGTGTTCTTCCACCGTTTCCTGCAACGGCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTGGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858