Detailed information NTG0901439

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: R6238_RS10750
• Genome accession: NZ_CP138212
• Coordinates: 2545092..2546429 (+)
• Length: 445 a.a.
• NCBI ID: WP_024960203.1
• Uniprot ID: -
• Organism: Pseudomonas syringae pv. syringae strain pss-2019
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2540092..2551429

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R6238_RS10725	pgeF	2540289..2541017 (-)	729	WP_024960201.1	peptidoglycan editing factor PgeF	-
R6238_RS10730	rluD	2541014..2541976 (-)	963	WP_002551999.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
R6238_RS10735	-	2542126..2543148 (+)	1023	WP_003344571.1	outer membrane protein assembly factor BamD	-
R6238_RS10740	-	2543268..2543507 (+)	240	WP_032607804.1	PP0621 family protein	-
R6238_RS10745	pilS	2543497..2545089 (+)	1593	WP_024960202.1	PAS domain-containing sensor histidine kinase	Regulator
R6238_RS10750	pilR	2545092..2546429 (+)	1338	WP_024960203.1	sigma-54 dependent transcriptional regulator	Regulator
R6238_RS10755	thiO	2546540..2547643 (-)	1104	WP_024960204.1	glycine oxidase ThiO	-
R6238_RS10760	-	2547669..2548073 (-)	405	WP_024960205.1	type IV pilin protein	-
R6238_RS10765	-	2548085..2551294 (-)	3210	WP_024960206.1	pilus assembly protein	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49692.64 Da
• Isoelectric Point: 6.3796

>NTDB_id=901439 R6238_RS10750 WP_024960203.1 2545092..2546429(+) (pilR) [Pseudomonas syringae pv. syringae strain pss-2019]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCEHDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=901439 R6238_RS10750 WP_024960203.1 2545092..2546429(+) (pilR) [Pseudomonas syringae pv. syringae strain pss-2019]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATCCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGCAGTGCCCGTAACGTCGCCGAAGCCCACGACTGGCTGGCCCGCGAGCCGTTCGACATGTGCCTGA
CCGACATGCGGCTGCCTGATGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTACCGGTGGCG
ATGATCACTGCACACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTCGGCAGGCTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGGAGTATCGACAATC
GCCTGCTGGGCGACTCGCTGGCGATGCGTACCTTGCGCAATCAGATTGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTTGTAGCGCGTCTGATCCACGAGCAGGGCCCACGCATCGACAAACCTTT
CATACCGGTGAATTGCGGTGCCATCCCTTCCGAACTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCGCACACCGGGACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATTCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCGGGTCGGTTCCGGCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTACCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGCACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGCCAGCCCTCAGGAGAGCGACGGCCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCGCTTGAAGAAACCCGCTGGAACCGCACCGCTGCAGCAGAAAG
GCTCAGCTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.201	99.551	0.769
pilR	Acinetobacter baumannii strain A118	48.608	100	0.51
luxO	Vibrio cholerae strain A1552	37.613	99.775	0.375