Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   R6238_RS06045 Genome accession   NZ_CP138212
Coordinates   1559998..1562214 (-) Length   738 a.a.
NCBI ID   WP_024959120.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. syringae strain pss-2019     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1554998..1567214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6238_RS06015 murB 1555798..1556817 (-) 1020 WP_024959122.1 UDP-N-acetylmuramate dehydrogenase -
  R6238_RS06020 kdsB 1556852..1557616 (-) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R6238_RS06025 - 1557613..1557798 (-) 186 WP_002552679.1 Trm112 family protein -
  R6238_RS06030 lpxK 1557816..1558811 (-) 996 WP_024959121.1 tetraacyldisaccharide 4'-kinase -
  R6238_RS06035 - 1558811..1559242 (-) 432 WP_003317468.1 biopolymer transporter ExbD -
  R6238_RS06040 exbB 1559239..1559916 (-) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R6238_RS06045 comA 1559998..1562214 (-) 2217 WP_024959120.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R6238_RS06050 - 1562351..1563139 (-) 789 WP_003421319.1 ABC transporter permease -
  R6238_RS06055 - 1563136..1564068 (-) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  R6238_RS06060 - 1564252..1564875 (-) 624 WP_003346579.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80244.29 Da        Isoelectric Point: 10.1980

>NTDB_id=901429 R6238_RS06045 WP_024959120.1 1559998..1562214(-) (comA) [Pseudomonas syringae pv. syringae strain pss-2019]
MRTGMIALALGLLALRFLPALPPTWLLLLMPTLALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAPHLDGQTLWVQG
KVVGLPSVAEGVVRFELEGAWSRRTKLPARIRVAWYGGQPVNSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGERLAPARAAWRDALRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRSLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWRWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQWLFVFLDAVAAALPAWLPSAVPVWAWWSSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDAGGERLLLAGDIDVSAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGAPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=901429 R6238_RS06045 WP_024959120.1 1559998..1562214(-) (comA) [Pseudomonas syringae pv. syringae strain pss-2019]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCGCTGCCGCCGACCTGGCTATT
GCTGCTGATGCCGACACTGGCGTTGATGCTGCTGCCGTTTCGTACCTATCCACTGGCGTTGTTCCTGCTCGGGTTCACGT
GGGCGTGCGTGTCGGCGCAGTGGGCGCTGAGTGACCGGTTGGCGCCGCATCTCGATGGTCAGACGCTGTGGGTACAGGGC
AAGGTGGTCGGTTTGCCGAGTGTCGCCGAAGGTGTGGTGCGTTTCGAGCTGGAAGGCGCCTGGTCACGACGTACCAAACT
GCCCGCGCGAATACGGGTGGCCTGGTACGGCGGCCAGCCCGTGAACAGCGGGGAGCGATGGCGCATGGCGGTCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCCGATGCTTTCGACTATGAGGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTGGTGGATGGTGAGCGGTTGGCACCCGCGCGTGCCGCCTGGCGCGATGCCCTTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGCGGTCTGGCAGCGCTGGTGCTGGGCGATGGCTCAGGATTGTCGAGTACCGACTGGCAGGTGT
TGCAGGATACCGGCACTGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGGGTGATTTACGCTTTG
GTCGCAGGCTTGGCGCGCTGGGGGCTGTGGCCACGCTCTTTGCCCTGGCTGCCGTGGGCATGTGCACTGGCGTTCAGCGC
TGCACTGGGCTACGGGCTGCTGGCCGGTTTCGAGGTGCCAGTCCGGCGCGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGCCATCTGGGCGTGGTCTGGCCCTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCGGCATTCTGATCCTGATTTTCAGTGGGCGTCTCGGCGC
CTGGCGCTGGTGGCAAAGCTGGACACGGGCGCAGTGGTTGATCGCCGTCGGCTTGTTGCCGATTCTGCTGGCGCTGAACT
TGCCGATCAGCCTCAGTGGGCCGTTCGCCAACTTGCTTGCCGTGCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGAACGCTGTTGCTGCCAGTCCCTGTGGTCGGGGAAGGTCTGCTATGGCTGGCTGGCGGGGCGCTGCAGTGGTTGTT
CGTGTTCCTCGACGCGGTGGCGGCAGCGTTGCCGGCCTGGTTGCCCAGTGCGGTGCCGGTCTGGGCATGGTGGTCGAGTC
TGCTCGGGGCCTTGCTCTTGTTACTGCCCAAGGGCGTGCCCATGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGCCAGGTAGACGTGTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACTCGCAATCACACACTTCTGTATGACGCAGGTCCGCGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCAGGCGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGCGGTGCG
GCGGCGGTTCATCAGGCCTTTCCGGTGAGCCGGGTGCTGGGTGGCGAGCTGGCCAGACTCGCCCCGCAACTCGACGCCCG
ATTGTGCGAGAGCGGTGCGCGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ACCCCGCCTCCTGCATCCTCAGCGTTGACGCCGGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTGAGCGCCGAG
CGCGCGGCAATCGACAGCGGGTTCGACCTGCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGGACCTCATCGTC
CAAAGCGTTTCTTCGCGCCGTCGCACCGGTCGGCGTGCTGATTTCCCGTGGTCGCAACAATGCGTTCGGTCACCCACACC
CGTTGGTCATGGCGCGCTATCGCGGCTTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCTGTGCGTCTGCAACTG
GGTACGTTCGGAGCGCCGCAGGCCGAGCGTGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.151

97.019

0.603
  comA Ralstonia pseudosolanacearum GMI1000

34.524

100

0.393