Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   R6238_RS06040 Genome accession   NZ_CP138212
Coordinates   1559239..1559916 (-) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas syringae pv. syringae strain pss-2019     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1554239..1564916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6238_RS06015 murB 1555798..1556817 (-) 1020 WP_024959122.1 UDP-N-acetylmuramate dehydrogenase -
  R6238_RS06020 kdsB 1556852..1557616 (-) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  R6238_RS06025 - 1557613..1557798 (-) 186 WP_002552679.1 Trm112 family protein -
  R6238_RS06030 lpxK 1557816..1558811 (-) 996 WP_024959121.1 tetraacyldisaccharide 4'-kinase -
  R6238_RS06035 - 1558811..1559242 (-) 432 WP_003317468.1 biopolymer transporter ExbD -
  R6238_RS06040 exbB 1559239..1559916 (-) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  R6238_RS06045 comA 1559998..1562214 (-) 2217 WP_024959120.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R6238_RS06050 - 1562351..1563139 (-) 789 WP_003421319.1 ABC transporter permease -
  R6238_RS06055 - 1563136..1564068 (-) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  R6238_RS06060 - 1564252..1564875 (-) 624 WP_003346579.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=901428 R6238_RS06040 WP_002552676.1 1559239..1559916(-) (exbB) [Pseudomonas syringae pv. syringae strain pss-2019]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=901428 R6238_RS06040 WP_002552676.1 1559239..1559916(-) (exbB) [Pseudomonas syringae pv. syringae strain pss-2019]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCAT
CGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCACCGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTGGACGGCGAAAAACTCAAGCAGCTGCGCGCTGACTCGCCGCTGGGCGAAATCCTTGCCGCAGGTCTGGCCAAT
TCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTACCT
CAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTGGTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCG
GCTCGTTCAACAGTTCCGGGGCCACCGCCAATGCCGGCGTGCTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCG
TCGGGTCTTATCGTCGCGATCCCGGCGATTTTCTTTCATCGCTTCCTGCAGAGCCGCGTCGATGAGTTGGTGGTCGGCAT
GGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAGATTGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738