Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SC192_RS17255 Genome accession   NZ_CP138205
Coordinates   3623243..3624664 (+) Length   473 a.a.
NCBI ID   WP_348896963.1    Uniprot ID   -
Organism   Acinetobacter sp. 2019-01-05     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3618243..3629664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC192_RS17235 (SC192_17250) thrC 3618497..3619636 (+) 1140 WP_111855727.1 threonine synthase -
  SC192_RS17240 (SC192_17255) pbpG 3619746..3620792 (-) 1047 WP_348896965.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SC192_RS17245 (SC192_17260) - 3621004..3621639 (+) 636 WP_000633799.1 response regulator -
  SC192_RS17250 (SC192_17265) pilS 3621650..3623218 (+) 1569 WP_348896964.1 sensor histidine kinase Regulator
  SC192_RS17255 (SC192_17270) pilR 3623243..3624664 (+) 1422 WP_348896963.1 sigma-54-dependent transcriptional regulator Regulator
  SC192_RS17260 (SC192_17275) - 3624668..3625852 (-) 1185 WP_348896962.1 S41 family peptidase -
  SC192_RS17265 (SC192_17280) gpmI 3625868..3627415 (-) 1548 WP_410488498.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  SC192_RS17270 (SC192_17285) lptG 3627539..3628609 (-) 1071 WP_348896960.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53066.32 Da        Isoelectric Point: 6.7803

>NTDB_id=901419 SC192_RS17255 WP_348896963.1 3623243..3624664(+) (pilR) [Acinetobacter sp. 2019-01-05]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVNKPVNQVHLDQLLQKALNRQKTDHDFVETALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWATPPKQLTDAAETYLLQQHFPGNVRELRNMIERAITLSDDAKIDIPHLHPAPLRANISNSISSVCET
IPNAVTAPQAVKKLPTEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=901419 SC192_RS17255 WP_348896963.1 3623243..3624664(+) (pilR) [Acinetobacter sp. 2019-01-05]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAGGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGCT
TAACCGATTTAAACCTTCCCGATGGGAGTGGATTAGACTTAGTCAAACATGTCTCTCAAAATTACACTAATACCCCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGTGCTTTTGATTTTGTAAATAAACC
CGTCAATCAAGTTCATTTAGATCAATTACTGCAAAAGGCACTCAATCGGCAAAAAACCGATCATGATTTTGTAGAAACTG
CATTAGAAAATAAATTATTAATTGGTCGTTCTCTGCCTATCCAACAGTTACGTATCGCGATTAAAAAAATTGCCCGCTCT
CAAGCACCGGTATTTGTTACTGGTGAATCCGGAACTGGTAAAGAAGTCGTTGCCAATCTGGTTCATCGCCTTAGTAATCG
TAGTGAAGGACCTTTTATCGCGATTAACTGTGGTGCTATTCCAACTGAACTGATGGAAAGCGAATTGTTTGGGCATAAAA
AAGGAAGCTTTACTGGCGCGACTCAAGATAAACAAGGCCTAATTTTATCCGCACACGGCGGTAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTGAGCATGCAAGTCAAACTGCTCCGTGCAGTACAGGAAAAAAAGATTCGTCCTGTCGGTTCTGA
CCAAGAGATAGATGTTGATTTTCGTGTGATCAGTGCCAGTCATCAAGACTTGGATTTACTGGTTCGGCAAGGCAAATTCC
GTCAGGATCTATTCTTCCGTATCCATGTAATGGATCTGATATTGCCACCTTTACGCGAACGTGGTGAAGATGTTCTTTTA
CTTGCAAACCACTTCATCCAAAAAATTTGTATGGAATGGGCAACGCCGCCCAAACAATTAACCGATGCAGCTGAAACGTA
CCTGCTACAGCAACACTTTCCGGGCAATGTTCGCGAATTAAGAAATATGATTGAGCGGGCAATTACCTTAAGTGATGATG
CCAAGATTGATATACCTCATTTACATCCAGCTCCGCTAAGAGCCAATATCTCTAACTCCATATCATCGGTATGTGAAACT
ATACCAAACGCTGTAACTGCGCCTCAGGCTGTAAAAAAATTACCAACTGAAGGGCTAGAACGCTATTTAGAGAATATTGA
AAAAGATATTTTGCTCAATGCACTCAACATGACCCACTGGAATCGAACCTTAGCAGCTAAAAAACTAGGAATGACTTTCC
GTTCTTTACGCTACCGTTTGAAGAAATTTGGGTTAGATACTGAAACCGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

94.926

100

0.949
  pilR Pseudomonas aeruginosa PAK

50.109

97.04

0.486