Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SC192_RS17250 Genome accession   NZ_CP138205
Coordinates   3621650..3623218 (+) Length   522 a.a.
NCBI ID   WP_348896964.1    Uniprot ID   A0AB39K661
Organism   Acinetobacter sp. 2019-01-05     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3616650..3628218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC192_RS17230 (SC192_17245) - 3617140..3618441 (+) 1302 WP_348896966.1 homoserine dehydrogenase -
  SC192_RS17235 (SC192_17250) thrC 3618497..3619636 (+) 1140 WP_111855727.1 threonine synthase -
  SC192_RS17240 (SC192_17255) pbpG 3619746..3620792 (-) 1047 WP_348896965.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SC192_RS17245 (SC192_17260) - 3621004..3621639 (+) 636 WP_000633799.1 response regulator -
  SC192_RS17250 (SC192_17265) pilS 3621650..3623218 (+) 1569 WP_348896964.1 sensor histidine kinase Regulator
  SC192_RS17255 (SC192_17270) pilR 3623243..3624664 (+) 1422 WP_348896963.1 sigma-54-dependent transcriptional regulator Regulator
  SC192_RS17260 (SC192_17275) - 3624668..3625852 (-) 1185 WP_348896962.1 S41 family peptidase -
  SC192_RS17265 (SC192_17280) gpmI 3625868..3627415 (-) 1548 WP_410488498.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59199.61 Da        Isoelectric Point: 6.0115

>NTDB_id=901418 SC192_RS17250 WP_348896964.1 3621650..3623218(+) (pilS) [Acinetobacter sp. 2019-01-05]
MQFPLNSSLSHTIFRLGNWYGLYRLIIAVSLNIILVLTNAQTDNSLQQPSLYFYTLLGYSILSLLQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQISLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSFFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHADLFEILKLGDLQEGDRFIFESQLSAYSINIKVQHLLVPQHALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDQEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIELSEFINSLFEEDLSDVK
HCIELKISNDSLKLLFDEKQLRQVMINLVRNALRHNAPDSPDVMINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=901418 SC192_RS17250 WP_348896964.1 3621650..3623218(+) (pilS) [Acinetobacter sp. 2019-01-05]
ATGCAATTTCCCTTAAACTCATCCTTGTCCCATACGATTTTTCGTTTGGGCAACTGGTATGGTTTATATCGTCTGATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCAATGCTCAAACCGATAACAGTTTGCAGCAACCTTCTTTATATTTTT
ATACTCTACTCGGCTATTCAATCTTAAGCCTTCTTCAGTTGCTATGCTTTAAATTTATTGCGACTCAAGCGACACGGCAG
CTTATTTTATTTTTTATTGTCGACATTATTTGTTTGAGTTTACTAACTTTTTCTGTCGGTGAACCAAATTTACAAATCAG
CCTGCTTTATGTAATTGCAATCTTTACTTCGGCAATTTTGCTCAGTGCAAGAATGTCTTTGCTCATTACATTACTTGCTG
TGATTGCTGTGATTTACCAACGATTTGTTGGTAGCTTTTTTGACTACAACAACCTCAATACGATTGGTAATAGTGCCCTA
TTGGCCTTCTTATTTTTTGTAGTGCATGGTATTGGTCAAATTGCAGTTCAGCGCTTTAAACTACTCGAAGCACTCACTTT
CCATCAGTCGATCGAACTTTATCAACTTCAAAATATCAATCGTTATATTTTAGAACAAATCGAAGAAGGCTATTTAGTTT
TAGATGAAAATTATGACATTGTGGTAAGCAATCCGGCAGCCTGTTCATTGCTTGGTATTCCTCCGCAATTTGCCAATGAA
AAATATCCTTTAGCTAAATGGCATGCAGATTTATTTGAAATTCTTAAGTTGGGTGACTTACAAGAAGGTGACCGATTTAT
TTTTGAATCTCAGCTTTCAGCCTACTCTATCAATATTAAAGTACAACACCTATTGGTGCCCCAACACGCATTAACACTGC
TCATTTTACAAGATGCCCAGCAAATTAATCAGCAAGCACAGCAGCTCAAACTTGCCGCCTTAGGACAACTCTCAGCAAGC
ATTGCTCACGAAATTCGTAATCCTCTTGCTGCAATTGTACAAGCAAATGAGTTACTTAAAGATAGCGATCAAGAGCAACA
AAACACTTTACGCCATATGATTGGTAAACAAACCAAGCGTATCGATAGTATTGTTCAAGATACTCTAGGACTTGCCCGCA
GCGAAAGAACTCATCCCATCCAAATTGAATTAAGTGAATTCATAAATAGCTTATTCGAAGAAGATTTATCTGACGTTAAA
CATTGTATCGAACTCAAAATTTCTAATGACTCTTTAAAACTTTTATTTGACGAAAAACAATTACGACAAGTCATGATCAA
TCTGGTTCGAAATGCTTTAAGACATAATGCACCTGATTCACCCGATGTCATGATCAATATTCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTCTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-254)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.061

100

0.941