Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SC192_RS15445 Genome accession   NZ_CP138205
Coordinates   3243543..3243953 (-) Length   136 a.a.
NCBI ID   WP_348895535.1    Uniprot ID   -
Organism   Acinetobacter sp. 2019-01-05     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3238543..3248953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC192_RS15415 (SC192_15425) - 3238625..3238894 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  SC192_RS15420 (SC192_15430) rapZ 3238891..3239742 (-) 852 WP_348895531.1 RNase adapter RapZ -
  SC192_RS15425 (SC192_15435) panC 3239765..3240613 (-) 849 WP_348895532.1 pantoate--beta-alanine ligase -
  SC192_RS15430 (SC192_15440) panB 3240617..3241426 (-) 810 WP_032047472.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  SC192_RS15435 (SC192_15445) folK 3241472..3241954 (-) 483 WP_348895533.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SC192_RS15440 (SC192_15450) pcnB 3241951..3243417 (-) 1467 WP_348895534.1 polynucleotide adenylyltransferase PcnB -
  SC192_RS15445 (SC192_15455) comEA 3243543..3243953 (-) 411 WP_348895535.1 ComEA family DNA-binding protein Machinery gene
  SC192_RS15450 (SC192_15460) mazG 3243922..3244728 (-) 807 WP_348895536.1 nucleoside triphosphate pyrophosphohydrolase -
  SC192_RS15455 (SC192_15465) - 3244842..3245615 (+) 774 WP_348895537.1 SDR family oxidoreductase -
  SC192_RS15460 (SC192_15470) - 3245660..3247966 (-) 2307 WP_348895538.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15742.03 Da        Isoelectric Point: 10.7219

>NTDB_id=901407 SC192_RS15445 WP_348895535.1 3243543..3243953(-) (comEA) [Acinetobacter sp. 2019-01-05]
MRFSMRLCKNKCFILIMMFLSGISSSVFAQSFDQNFQEWKTKQHMYDQKLNIHKSSRSDHSKNSQRNNFSDSTGQINLNQ
ASVNEFRQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLVL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=901407 SC192_RS15445 WP_348895535.1 3243543..3243953(-) (comEA) [Acinetobacter sp. 2019-01-05]
ATGCGATTCAGCATGAGACTTTGCAAGAATAAGTGTTTTATTTTAATAATGATGTTTTTGAGTGGTATTTCATCATCAGT
TTTTGCTCAATCTTTTGATCAGAACTTTCAAGAGTGGAAGACTAAACAGCATATGTATGACCAAAAATTAAACATACATA
AGTCTTCACGTTCTGATCATTCAAAAAATTCTCAAAGAAACAATTTTAGTGATTCTACAGGGCAAATTAATTTAAATCAG
GCCTCTGTAAATGAGTTCCGGCAGTTAAAAGGAGTCGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACCGACAAAAGAA
TGGTAGTTTTAAAAATATTGATGAAATTAAAAATGTAAAAGGAATCGGGCCAGCTATTTTTGAAAAAAATAAATCCCGGC
TAGTTTTATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

80.882

100

0.809
  comEA Acinetobacter baumannii D1279779

80.147

100

0.801
  comEA Acinetobacter baylyi ADP1

50

80.882

0.404