Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RA179_RS18530 Genome accession   NZ_CP138201
Coordinates   3582393..3583790 (-) Length   465 a.a.
NCBI ID   WP_106021953.1    Uniprot ID   -
Organism   Bacillus halotolerans strain DY299     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3577393..3588790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA179_RS18495 (RA179_18495) flgL 3577581..3578477 (-) 897 WP_106019635.1 flagellar hook-associated protein FlgL -
  RA179_RS18500 (RA179_18500) flgK 3578487..3580010 (-) 1524 WP_318751973.1 flagellar hook-associated protein FlgK -
  RA179_RS18505 (RA179_18505) flgN 3580029..3580511 (-) 483 WP_254517898.1 flagellar protein FlgN -
  RA179_RS18510 (RA179_18510) flgM 3580526..3580792 (-) 267 WP_024123025.1 flagellar biosynthesis anti-sigma factor FlgM -
  RA179_RS18515 (RA179_18515) - 3580872..3581291 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  RA179_RS18520 (RA179_18520) comFC 3581365..3582087 (-) 723 WP_142396176.1 double zinc ribbon domain-containing protein Machinery gene
  RA179_RS18525 (RA179_18525) - 3582051..3582347 (-) 297 WP_024123028.1 competence protein ComFB -
  RA179_RS18530 (RA179_18530) comFA 3582393..3583790 (-) 1398 WP_106021953.1 ATP-dependent helicase ComFA Machinery gene
  RA179_RS18535 (RA179_18535) - 3583897..3584742 (-) 846 WP_106019639.1 DegV family protein -
  RA179_RS18540 (RA179_18540) degU 3584839..3585528 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RA179_RS18545 (RA179_18545) degS 3585611..3586768 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  RA179_RS18550 (RA179_18550) - 3586985..3587638 (+) 654 WP_044159478.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 52911.04 Da        Isoelectric Point: 9.7879

>NTDB_id=901373 RA179_RS18530 WP_106021953.1 3582393..3583790(-) (comFA) [Bacillus halotolerans strain DY299]
MQTKTSESNSPFSKELQQQLQGRHLLKTEIPFSDEIIDWHIEHGYISAEESISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRVSEDISLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IESALNLRLRVCIATPRTDVVLELAPRLKAAFQGADISVLYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
RWIEQHVKEGKPVFLFVPSISVLVKAASCFKNMNYRTAAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNRLVNI

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=901373 RA179_RS18530 WP_106021953.1 3582393..3583790(-) (comFA) [Bacillus halotolerans strain DY299]
ATGCAGACTAAGACATCAGAATCGAACAGCCCATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTTAA
AACAGAAATCCCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGAGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATATTTCTTTATATTCCTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATCGGCATTAAATCTAAGACTGCGTGTTTGTATTGCGACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAAGGCTGCATTTCAGGGTGCTGATATTTCAGTTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGTTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACGTATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAGC
CATTGCCTGAACCGCGCTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGAACAGCATGTGAAAGAAGGAAAGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTCTGGTAAAAGCTGC
TTCCTGTTTTAAAAACATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTTATTTATTTTCACTTCGGAAAAACAAAGAGTATGATTGAGGCAAGAAAACATATAAAAATAATGA
ATGAATTGGCTTTAAAAAATAGACTAGTTAATATTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(121-269)

Helicase conserved C-terminal domain (Helicase_C)

(323-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.768

97.419

0.826