Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   RA179_RS18520 Genome accession   NZ_CP138201
Coordinates   3581365..3582087 (-) Length   240 a.a.
NCBI ID   WP_142396176.1    Uniprot ID   -
Organism   Bacillus halotolerans strain DY299     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3576365..3587087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA179_RS18485 (RA179_18485) fliW 3576507..3576938 (-) 432 WP_024123020.1 flagellar assembly protein FliW -
  RA179_RS18490 (RA179_18490) - 3576959..3577534 (-) 576 WP_254517897.1 DUF6470 family protein -
  RA179_RS18495 (RA179_18495) flgL 3577581..3578477 (-) 897 WP_106019635.1 flagellar hook-associated protein FlgL -
  RA179_RS18500 (RA179_18500) flgK 3578487..3580010 (-) 1524 WP_318751973.1 flagellar hook-associated protein FlgK -
  RA179_RS18505 (RA179_18505) flgN 3580029..3580511 (-) 483 WP_254517898.1 flagellar protein FlgN -
  RA179_RS18510 (RA179_18510) flgM 3580526..3580792 (-) 267 WP_024123025.1 flagellar biosynthesis anti-sigma factor FlgM -
  RA179_RS18515 (RA179_18515) - 3580872..3581291 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  RA179_RS18520 (RA179_18520) comFC 3581365..3582087 (-) 723 WP_142396176.1 double zinc ribbon domain-containing protein Machinery gene
  RA179_RS18525 (RA179_18525) - 3582051..3582347 (-) 297 WP_024123028.1 competence protein ComFB -
  RA179_RS18530 (RA179_18530) comFA 3582393..3583790 (-) 1398 WP_106021953.1 ATP-dependent helicase ComFA Machinery gene
  RA179_RS18535 (RA179_18535) - 3583897..3584742 (-) 846 WP_106019639.1 DegV family protein -
  RA179_RS18540 (RA179_18540) degU 3584839..3585528 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RA179_RS18545 (RA179_18545) degS 3585611..3586768 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27052.24 Da        Isoelectric Point: 8.4157

>NTDB_id=901372 RA179_RS18520 WP_142396176.1 3581365..3582087(-) (comFC) [Bacillus halotolerans strain DY299]
MRNETGGGSKKLICLLCDSQFSQAVSWCSLFLLKPDDRVCQSCRNKLQIIKGAICPLCGRPQTAHEVCADCEAWKSRIDD
GLRLSQNRSVYLYNDMMKETLARMKFRGDAAIISAFKNDFSSEFSAVYPDKRLVLVPIPLSEERKVERGFNQSQMLAECL
NRPILNPLIRLNNEKQSKKKKTERLLSEHVFETKNSSVEGMDIVLIDDLYTTGATLHYAARCLLEKGEAGSVSSFTLVRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=901372 RA179_RS18520 WP_142396176.1 3581365..3582087(-) (comFC) [Bacillus halotolerans strain DY299]
ATGCGAAACGAGACAGGAGGAGGCTCTAAAAAACTGATCTGTCTATTATGTGATTCACAATTTTCTCAAGCTGTTTCATG
GTGCTCACTATTCTTATTAAAACCTGACGACAGGGTCTGTCAGTCCTGCAGAAACAAATTACAGATCATCAAAGGGGCCA
TCTGTCCGCTTTGCGGCAGGCCTCAAACCGCTCATGAAGTGTGTGCGGATTGCGAGGCATGGAAATCAAGAATAGATGAC
GGCTTAAGGCTCAGTCAAAACCGTTCTGTTTACTTATATAATGACATGATGAAAGAAACGCTCGCCCGAATGAAATTCAG
GGGAGATGCAGCGATAATAAGCGCTTTTAAAAATGACTTTTCCTCAGAATTCTCTGCTGTCTATCCAGATAAACGCCTTG
TGCTCGTTCCCATTCCGTTAAGCGAAGAACGGAAAGTTGAACGCGGCTTTAACCAGTCACAAATGCTTGCTGAATGCTTA
AACCGGCCCATCCTCAATCCTCTCATCCGCCTGAATAATGAAAAGCAGTCTAAGAAAAAGAAAACGGAGCGCCTGCTTTC
AGAGCATGTTTTTGAAACAAAAAACAGCTCGGTTGAGGGTATGGATATCGTTTTAATCGACGATCTTTATACTACGGGCG
CCACTTTGCACTATGCTGCCCGCTGTTTATTGGAGAAAGGCGAAGCTGGTTCTGTGTCATCTTTTACCTTAGTGAGAAGC
TAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(184-238)

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

75.833

100

0.758