Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   RA179_RS12590 Genome accession   NZ_CP138201
Coordinates   2477786..2478121 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus halotolerans strain DY299     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2472786..2483121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA179_RS12570 (RA179_12570) gcvT 2473376..2474464 (-) 1089 WP_151175141.1 glycine cleavage system aminomethyltransferase GcvT -
  RA179_RS12575 (RA179_12575) - 2474908..2476581 (+) 1674 WP_127696774.1 SNF2-related protein -
  RA179_RS12580 (RA179_12580) - 2476601..2477395 (+) 795 WP_127696773.1 YqhG family protein -
  RA179_RS12585 (RA179_12585) sinI 2477579..2477752 (+) 174 WP_024122036.1 anti-repressor SinI family protein Regulator
  RA179_RS12590 (RA179_12590) sinR 2477786..2478121 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  RA179_RS12595 (RA179_12595) tasA 2478208..2478993 (-) 786 WP_106020091.1 biofilm matrix protein TasA -
  RA179_RS12600 (RA179_12600) - 2479058..2479642 (-) 585 WP_105955579.1 signal peptidase I -
  RA179_RS12605 (RA179_12605) tapA 2479614..2480375 (-) 762 WP_106020093.1 amyloid fiber anchoring/assembly protein TapA -
  RA179_RS12610 (RA179_12610) - 2480653..2480976 (+) 324 WP_024122040.1 YqzG/YhdC family protein -
  RA179_RS12615 (RA179_12615) - 2481019..2481198 (-) 180 WP_003236949.1 YqzE family protein -
  RA179_RS12620 (RA179_12620) comGG 2481270..2481644 (-) 375 WP_106020094.1 competence type IV pilus minor pilin ComGG Machinery gene
  RA179_RS12625 (RA179_12625) comGF 2481645..2482028 (-) 384 WP_038954226.1 competence type IV pilus minor pilin ComGF Machinery gene
  RA179_RS12630 (RA179_12630) comGE 2482054..2482401 (-) 348 WP_106020095.1 competence type IV pilus minor pilin ComGE Machinery gene
  RA179_RS12635 (RA179_12635) comGD 2482385..2482816 (-) 432 WP_255003480.1 competence type IV pilus minor pilin ComGD Machinery gene
  RA179_RS12640 (RA179_12640) comGC 2482806..2483102 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=901346 RA179_RS12590 WP_003226345.1 2477786..2478121(+) (sinR) [Bacillus halotolerans strain DY299]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=901346 RA179_RS12590 WP_003226345.1 2477786..2478121(+) (sinR) [Bacillus halotolerans strain DY299]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCAGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCTGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1