Detailed information NTG0901240

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: SBP02_RS12750
• Genome accession: NZ_CP137892
• Coordinates: 2785843..2788065 (-)
• Length: 740 a.a.
• NCBI ID: WP_318642148.1
• Uniprot ID: -
• Organism: Pseudomonas benzenivorans strain HNIBRBA3361
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2780843..2793065

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SBP02_RS12715 (SBP02_12715)	murB	2781205..2782224 (-)	1020	WP_318642141.1	UDP-N-acetylmuramate dehydrogenase	-
SBP02_RS12720 (SBP02_12720)	-	2782221..2782685 (-)	465	WP_318642142.1	low molecular weight protein-tyrosine-phosphatase	-
SBP02_RS12725 (SBP02_12725)	kdsB	2782685..2783449 (-)	765	WP_318642143.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
SBP02_RS12730 (SBP02_12730)	-	2783450..2783635 (-)	186	WP_318642144.1	Trm112 family protein	-
SBP02_RS12735 (SBP02_12735)	lpxK	2783695..2784699 (-)	1005	WP_318642145.1	tetraacyldisaccharide 4'-kinase	-
SBP02_RS12740 (SBP02_12740)	-	2784713..2785141 (-)	429	WP_318642146.1	biopolymer transporter ExbD	-
SBP02_RS12745 (SBP02_12745)	exbB	2785138..2785770 (-)	633	WP_318642147.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
SBP02_RS12750 (SBP02_12750)	comA	2785843..2788065 (-)	2223	WP_318642148.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
SBP02_RS12755 (SBP02_12755)	-	2788205..2788738 (+)	534	WP_318642149.1	DUF2062 domain-containing protein	-
SBP02_RS12760 (SBP02_12760)	-	2788791..2790035 (-)	1245	WP_318642150.1	lipoprotein-releasing ABC transporter permease subunit	-
SBP02_RS12765 (SBP02_12765)	lolD	2790035..2790718 (-)	684	WP_318646337.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
SBP02_RS12770 (SBP02_12770)	-	2790741..2791991 (-)	1251	WP_318642151.1	lipoprotein-releasing ABC transporter permease subunit	-
SBP02_RS12775 (SBP02_12775)	-	2792087..2792650 (+)	564	WP_318642152.1	PilZ domain-containing protein	-
SBP02_RS12780 (SBP02_12780)	-	2792678..2792968 (+)	291	WP_318642153.1	phosphodiesterase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 80186.29 Da
• Isoelectric Point: 10.7710

>NTDB_id=901240 SBP02_RS12750 WP_318642148.1 2785843..2788065(-) (comA) [Pseudomonas benzenivorans strain HNIBRBA3361]
MRLGIFALVAGLLVLRFLPSLPAVWLSALLALLGVSLLPSRGYPLGFFLIGFAWACISAQWALDDRLAPELDERTLWLEG
RVAGLPEVREGVVRFEVFQAKSRRAELPTRIRLAWYGGPQVRGGETWRLAVRLKRPHGLVNPQSFDYEAWLLAQRIGATG
TVKSGRRLEAAAGALAWRDALRQRLLGSGGPRTGALAALVLGDDSGLTAADWRVLQHTGTVHLLVISGQHIALVAGLLYG
LVAGLARLGWWPRGWPWLPSACLLACCGALVYGVAAGFEVPVRRACVMVALVLLWRWRFRHLGAWLPLLAALALVLLVEP
LSSLQPGFWLSFGAVALLILIFGGRLGAWAWWRSLGRAQWAMAVGLLPLLLALGLPISASGPLANLVAVPWVGMAVVPLA
LLGTLLLPVPAVGEGLLWLAGGALELLFRLLASIATWLPAWLPSSLPVGVWLLLMLGALLLLLPSGIPLRGLGWLLLLPM
FCSPQSRPPQGQAEVWVLDVGQGLAVLLRTREHALLYDAGARFGEFDIGERVVLPSLRALDVRRLDLLLISHADNDHAGG
APAIGQGMAVERVWSGEAGVLPAQLRARDCPSGYRWEWDGVRFSLWRWAQAGDANQSSCVLLVEAAGERLWLTGDIDSRA
ERALLATGLDLRADWLLVPHHGSRSSSSAAFLKAVAPRAALISRGRHNGFGHPHPTVVARYAALPARLYDTAEQGALQLR
LGTFGEARGLRAERRFWREK

Nucleotide

• Length: 2223 bp

>NTDB_id=901240 SBP02_RS12750 WP_318642148.1 2785843..2788065(-) (comA) [Pseudomonas benzenivorans strain HNIBRBA3361]
ATGCGCCTGGGGATATTCGCGCTGGTCGCGGGATTGCTGGTGCTGCGGTTTCTGCCGTCCTTGCCGGCTGTCTGGCTCTC
GGCTCTGCTGGCACTGCTGGGAGTGTCGCTACTGCCGTCCCGCGGCTATCCGCTGGGGTTCTTCCTCATCGGTTTCGCGT
GGGCCTGTATCTCGGCCCAGTGGGCGCTGGATGACCGCCTGGCGCCCGAGCTGGATGAGCGCACCCTGTGGCTGGAGGGG
CGGGTGGCGGGGTTGCCGGAGGTGCGCGAGGGCGTGGTGCGCTTCGAAGTGTTCCAGGCGAAGTCGCGGCGCGCCGAGCT
GCCGACGCGGATTCGCCTGGCCTGGTACGGCGGGCCGCAGGTGCGAGGTGGCGAGACCTGGCGCCTGGCGGTACGGCTGA
AGCGTCCCCATGGCCTGGTCAATCCGCAATCCTTCGACTACGAGGCCTGGCTGCTGGCGCAGCGCATTGGCGCCACCGGC
ACGGTGAAGAGCGGACGCCGACTGGAGGCGGCCGCGGGAGCGCTGGCCTGGCGCGATGCGCTGCGTCAGCGTTTGCTTGG
TAGCGGCGGTCCGCGCACGGGGGCGCTGGCGGCCCTGGTGCTGGGCGACGACTCGGGGCTGACGGCGGCGGACTGGCGGG
TGTTGCAGCATACCGGCACCGTGCATCTGCTGGTGATCTCCGGCCAACATATTGCCCTGGTGGCGGGCTTGCTTTACGGC
CTGGTGGCAGGGCTGGCGCGCCTGGGGTGGTGGCCGCGGGGCTGGCCCTGGCTGCCCAGTGCCTGCCTCCTGGCCTGCTG
CGGGGCACTGGTCTACGGGGTGGCGGCGGGGTTCGAGGTGCCGGTGCGGCGTGCCTGTGTGATGGTTGCGCTGGTGCTGC
TCTGGCGTTGGCGCTTTCGCCATCTCGGCGCCTGGTTGCCGTTGCTGGCAGCCCTGGCCCTGGTGCTGTTGGTGGAGCCT
TTGAGCAGCCTGCAGCCGGGCTTCTGGCTGTCCTTCGGCGCGGTGGCTCTATTGATTCTGATCTTCGGCGGCCGTCTGGG
CGCCTGGGCCTGGTGGCGCAGCCTGGGGCGGGCGCAGTGGGCGATGGCGGTCGGGCTGTTGCCCTTGCTGCTGGCGTTGG
GGCTGCCGATCAGTGCCAGCGGCCCGCTGGCCAACCTGGTCGCCGTGCCCTGGGTCGGCATGGCGGTCGTGCCCTTGGCC
CTGCTCGGCACCCTGTTGCTGCCGGTGCCGGCAGTAGGTGAGGGGCTGCTGTGGCTGGCCGGCGGTGCCCTCGAGTTGCT
GTTCCGCCTGTTGGCGTCGATCGCCACCTGGTTGCCGGCCTGGTTGCCCAGTTCCCTGCCGGTCGGTGTCTGGTTGTTGC
TGATGCTCGGCGCCTTGCTGCTGTTGTTGCCGTCCGGTATTCCCCTGCGTGGGCTCGGCTGGCTCCTGCTGCTGCCGATG
TTCTGCAGTCCGCAGTCGAGGCCGCCCCAGGGGCAGGCCGAGGTCTGGGTGCTGGACGTCGGTCAGGGTCTGGCCGTGCT
GCTGCGTACCCGGGAACATGCGCTGTTGTATGACGCCGGCGCGCGCTTCGGCGAGTTCGATATCGGCGAGCGTGTGGTGC
TGCCCTCGCTGCGGGCCCTGGATGTGCGGCGCCTCGATCTGCTGTTGATCAGCCACGCCGACAACGATCATGCCGGTGGC
GCCCCGGCCATAGGCCAGGGCATGGCGGTCGAGCGGGTGTGGAGCGGCGAGGCCGGCGTCTTGCCGGCGCAGCTGCGGGC
CCGGGACTGCCCGTCAGGTTATCGCTGGGAGTGGGACGGGGTGCGTTTCAGCCTCTGGCGCTGGGCTCAGGCGGGCGATG
CCAACCAGTCCTCCTGCGTGCTGTTGGTCGAGGCTGCAGGCGAGCGCCTGTGGTTGACCGGCGATATCGACAGTCGCGCC
GAGCGGGCCTTGCTCGCCACGGGCCTGGATCTGCGCGCCGACTGGCTGCTGGTGCCCCATCATGGCAGCCGCAGCTCCTC
TTCCGCCGCCTTCCTAAAGGCCGTGGCGCCGCGCGCGGCGCTGATCTCCCGGGGGCGCCACAATGGCTTCGGCCACCCTC
ATCCCACGGTTGTGGCGCGTTATGCGGCGCTGCCCGCGCGGCTCTATGACACGGCCGAGCAGGGCGCCCTGCAGCTGCGC
CTGGGCACCTTCGGCGAGGCCCGGGGGCTGCGCGCCGAGCGTCGATTCTGGCGAGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (499-683)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (199-462)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	66.994	96.216	0.645
comA	Ralstonia pseudosolanacearum GMI1000	35.782	100	0.408