Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   SBP02_RS12745 Genome accession   NZ_CP137892
Coordinates   2785138..2785770 (-) Length   210 a.a.
NCBI ID   WP_318642147.1    Uniprot ID   -
Organism   Pseudomonas benzenivorans strain HNIBRBA3361     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2780138..2790770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBP02_RS12715 (SBP02_12715) murB 2781205..2782224 (-) 1020 WP_318642141.1 UDP-N-acetylmuramate dehydrogenase -
  SBP02_RS12720 (SBP02_12720) - 2782221..2782685 (-) 465 WP_318642142.1 low molecular weight protein-tyrosine-phosphatase -
  SBP02_RS12725 (SBP02_12725) kdsB 2782685..2783449 (-) 765 WP_318642143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SBP02_RS12730 (SBP02_12730) - 2783450..2783635 (-) 186 WP_318642144.1 Trm112 family protein -
  SBP02_RS12735 (SBP02_12735) lpxK 2783695..2784699 (-) 1005 WP_318642145.1 tetraacyldisaccharide 4'-kinase -
  SBP02_RS12740 (SBP02_12740) - 2784713..2785141 (-) 429 WP_318642146.1 biopolymer transporter ExbD -
  SBP02_RS12745 (SBP02_12745) exbB 2785138..2785770 (-) 633 WP_318642147.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SBP02_RS12750 (SBP02_12750) comA 2785843..2788065 (-) 2223 WP_318642148.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SBP02_RS12755 (SBP02_12755) - 2788205..2788738 (+) 534 WP_318642149.1 DUF2062 domain-containing protein -
  SBP02_RS12760 (SBP02_12760) - 2788791..2790035 (-) 1245 WP_318642150.1 lipoprotein-releasing ABC transporter permease subunit -
  SBP02_RS12765 (SBP02_12765) lolD 2790035..2790718 (-) 684 WP_318646337.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22720.97 Da        Isoelectric Point: 8.5099

>NTDB_id=901239 SBP02_RS12745 WP_318642147.1 2785138..2785770(-) (exbB) [Pseudomonas benzenivorans strain HNIBRBA3361]
MWELVKAGGWMMLPIILCSIAAAGIIAERLWTLRASRITPPNLLGEVWRWIKDKKLSSQKLKELRANSPLGQILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAPVLAGGIAKALITTAA
GLMVAIPALFFHRYLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=901239 SBP02_RS12745 WP_318642147.1 2785138..2785770(-) (exbB) [Pseudomonas benzenivorans strain HNIBRBA3361]
GTGTGGGAACTGGTCAAAGCCGGCGGCTGGATGATGCTGCCAATTATCCTGTGTTCCATCGCCGCGGCCGGCATCATCGC
CGAGCGCCTGTGGACGTTGCGCGCCAGCCGCATCACCCCGCCCAACCTGCTGGGCGAGGTGTGGCGCTGGATCAAGGACA
AGAAGCTGAGCAGCCAGAAACTCAAGGAGCTGCGCGCCAATTCGCCCCTGGGGCAGATTCTCGCGGCCGGCCTGGCCAAC
TCCAAGCATGGCCGGGAGATCATGAAGGAGTGCATCGAGGAGGCTGCCGCGCGGGTCATCCATGAGCTCGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGGCATCGCCCCGCTGCTCGGCCTGCTCGGCACCGTGCTGGGCATGATCGAGATCTTCA
GTTCCTTCATGGGGTCGGGCATGGCCAATGCCCCGGTGCTCGCCGGCGGCATCGCCAAGGCGCTGATCACCACGGCGGCC
GGACTGATGGTGGCCATTCCGGCGTTGTTCTTCCACCGCTACCTGCAACGGCGCATCGACGAGCTGGTGGTCGGCATGGA
GCAGGAGGCGATCAAGCTGGTGGAGGTGGTGCAGGGCGACCGCGACGTCGATCTGGGTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

89.524

100

0.895