Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SBP02_RS02100 Genome accession   NZ_CP137892
Coordinates   434811..436907 (+) Length   698 a.a.
NCBI ID   WP_318646285.1    Uniprot ID   -
Organism   Pseudomonas benzenivorans strain HNIBRBA3361     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429811..441907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBP02_RS02080 (SBP02_02080) pilM 431979..433043 (+) 1065 WP_318644764.1 pilus assembly protein PilM Machinery gene
  SBP02_RS02085 (SBP02_02085) pilN 433043..433615 (+) 573 WP_318644765.1 type 4a pilus biogenesis protein PilN -
  SBP02_RS02090 (SBP02_02090) pilO 433612..434232 (+) 621 WP_318644766.1 type 4a pilus biogenesis protein PilO -
  SBP02_RS02095 (SBP02_02095) pilP 434232..434756 (+) 525 WP_318644767.1 type 4a pilus biogenesis lipoprotein PilP -
  SBP02_RS02100 (SBP02_02100) pilQ 434811..436907 (+) 2097 WP_318646285.1 type IV pilus secretin PilQ Machinery gene
  SBP02_RS02105 (SBP02_02105) aroK 436912..437430 (+) 519 WP_318644768.1 shikimate kinase AroK -
  SBP02_RS02110 (SBP02_02110) aroB 437482..438585 (+) 1104 WP_318644769.1 3-dehydroquinate synthase -
  SBP02_RS02115 (SBP02_02115) - 438596..440179 (+) 1584 WP_318644770.1 AAA family ATPase -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 75113.23 Da        Isoelectric Point: 4.6452

>NTDB_id=901232 SBP02_RS02100 WP_318646285.1 434811..436907(+) (pilQ) [Pseudomonas benzenivorans strain HNIBRBA3361]
MNGSLSHLGVSLCALLLSPALLAANLQALDVAALPGDRVELKLSFDEPVLAPRGYTIEQPARIALDLPGVSNQLGSKNRE
LGVGNARSVTVVEAKDRTRLIINLTSLSPYSTRVEGNDLYVLVGEGAGGSASSFRPAVVAATTASAPASKIYAAQGKAIN
NIDFQRGEQGEGNVVITLSDASVSPNIQEQGGKIRLDFAKTLLPDALRVRLDVKDFATPVQFVSATGSADKASIVIEPVG
VYDYLAYQTDNKLTLSIKPLTQEEVDKRKSERFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVEGNITLRLQN
VPWDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELEAQKQIAELAPLRRELIQVNYAKAADMAKLFQSVASADA
SADERGSITVDDRTNSIIAYQTQDRLDELRRIVTQLDIPVRQVMIEARIVEANVDFDKSLGVRWGGASVGDNKWSVFGRG
QRISLEEGAAGAADTIKLPFNAPFVDIGASDATSGIGIGFITDNTILDLELSAMEKTGNGEIISQPKVVTSDKETAKILK
GSEIPYPEASSSGAATIAFAEAVLSLEVTPQITPDNRIIMEVKVTKDEPDFTQEVNGTPSIKKNEVNAKVLVSDGETIVI
GGVFSNTRSSAVDKVPFLGDLPYLGRLFRRDVVQDNKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=901232 SBP02_RS02100 WP_318646285.1 434811..436907(+) (pilQ) [Pseudomonas benzenivorans strain HNIBRBA3361]
ATGAATGGCTCCCTTTCACATCTAGGTGTTTCTCTGTGCGCGCTGCTGTTATCACCTGCGTTGCTTGCTGCAAACCTGCA
GGCGCTTGATGTCGCTGCCTTGCCTGGGGATCGAGTCGAACTAAAGCTGTCTTTCGATGAGCCGGTTCTTGCGCCTCGCG
GTTACACAATCGAGCAGCCGGCGCGAATCGCTCTCGATCTACCGGGTGTTTCCAATCAACTGGGCTCTAAGAATCGAGAG
CTAGGCGTAGGCAATGCGCGCAGCGTAACTGTAGTCGAAGCCAAGGATCGGACTCGCTTGATCATTAACTTGACCAGCTT
GTCGCCCTACAGTACTCGGGTTGAGGGCAATGACCTTTATGTATTGGTTGGGGAAGGGGCCGGCGGGAGCGCCTCCTCTT
TCCGTCCAGCAGTTGTGGCAGCGACCACTGCAAGTGCGCCTGCGTCCAAGATATATGCTGCACAGGGCAAAGCTATCAAT
AATATTGATTTTCAGCGGGGGGAGCAGGGTGAGGGTAATGTGGTTATTACCTTGTCCGATGCTTCCGTAAGCCCGAATAT
TCAGGAGCAGGGTGGCAAGATACGCTTGGACTTTGCGAAAACACTATTGCCTGATGCTCTCCGGGTCCGCTTGGATGTTA
AGGATTTCGCGACGCCGGTGCAGTTCGTCAGTGCGACGGGGTCAGCTGATAAGGCAAGTATCGTAATTGAGCCGGTAGGC
GTGTACGACTATTTGGCATACCAGACAGACAATAAGCTTACGCTGAGTATAAAGCCGTTGACTCAGGAAGAGGTTGATAA
GCGCAAGAGTGAGCGCTTTGCGTATAGCGGTGAAAAACTTTCGTTGAACTTCCAGGATATAGATGTTCGCTCAGTCCTTC
AGTTGATTGCAGATTTTACAGATCTTAATCTGGTTGCTAGCGATACGGTTGAGGGCAATATCACCCTGCGCCTGCAAAAT
GTGCCATGGGACCAGGCGTTGGATCTGGTTCTGAAAACTAAAGGCTTGGATAAGCGGCAGGTCGGTAATGTGCTGTTAGT
CGCGCCTGCGGACGAAATTGCAGCTCGTGAGCGTCAAGAGCTTGAGGCACAGAAGCAGATTGCAGAGTTGGCTCCGCTGC
GCCGAGAATTGATTCAGGTAAACTACGCTAAGGCGGCTGACATGGCAAAGCTATTCCAGTCGGTCGCTAGCGCAGACGCC
AGTGCTGACGAGCGTGGCTCCATTACGGTCGATGATAGAACTAATAGTATTATTGCCTACCAGACTCAGGATCGGCTTGA
CGAGCTGCGACGTATCGTTACTCAGCTAGACATTCCTGTTAGGCAGGTAATGATTGAGGCCCGCATAGTTGAGGCTAATG
TTGACTTTGACAAGAGTCTTGGTGTGCGTTGGGGGGGGGCTTCTGTAGGTGATAATAAGTGGAGCGTCTTTGGGCGTGGT
CAGCGTATTTCTCTCGAAGAGGGGGCGGCTGGTGCAGCAGATACAATCAAACTGCCATTTAATGCACCCTTCGTCGATAT
AGGTGCGTCGGATGCTACTTCGGGTATTGGCATAGGTTTTATTACGGATAATACGATTCTTGATCTAGAGCTTTCGGCGA
TGGAGAAAACCGGCAACGGTGAGATCATTTCTCAGCCGAAGGTCGTCACTTCTGATAAGGAGACGGCAAAAATATTGAAA
GGTTCTGAGATCCCTTATCCCGAGGCTAGCTCTAGTGGTGCTGCTACTATCGCCTTTGCCGAGGCTGTACTTTCTCTTGA
GGTTACCCCGCAGATAACGCCTGATAATCGGATTATCATGGAGGTAAAGGTAACCAAAGATGAGCCGGACTTTACTCAAG
AGGTCAATGGAACTCCCTCGATCAAGAAGAATGAGGTCAATGCCAAGGTTCTGGTCTCTGACGGCGAAACCATCGTAATC
GGTGGGGTGTTCTCCAATACAAGAAGCAGTGCTGTAGATAAAGTCCCATTTTTGGGTGATCTTCCGTACTTGGGTCGCTT
GTTTCGAAGAGATGTCGTTCAGGATAACAAGTCCGAGCTGCTGGTTTTCCTTACTCCGCGTATCATGAACAACCAGGCCA
TTGCCGTGAGCCGTTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)

AMIN domain (AMIN)

(38-120)

Bacterial type II and III secretion system protein (Secretin)

(533-689)

Secretin and TonB N terminus short domain (STN)

(303-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

74.965

100

0.768
  comQ Acinetobacter baylyi ADP1

41.823

98.997

0.414
  pilQ Acinetobacter baumannii strain A118

40.541

100

0.408
  pilQ Acinetobacter baumannii D1279779

40.541

100

0.408
  pilQ Legionella pneumophila strain Lp02

38.439

97.278

0.374
  pilQ Legionella pneumophila strain ERS1305867

38.405

96.991

0.372