Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   SBO70_RS13355 Genome accession   NZ_CP137890
Coordinates   2722977..2723312 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain GJJK74     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2717977..2728312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBO70_RS13335 (SBO70_13335) gcvT 2718583..2719683 (-) 1101 WP_031378949.1 glycine cleavage system aminomethyltransferase GcvT -
  SBO70_RS13340 (SBO70_13340) - 2720107..2721777 (+) 1671 WP_031378948.1 DEAD/DEAH box helicase -
  SBO70_RS13345 (SBO70_13345) - 2721799..2722593 (+) 795 WP_007408330.1 YqhG family protein -
  SBO70_RS13350 (SBO70_13350) sinI 2722770..2722943 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  SBO70_RS13355 (SBO70_13355) sinR 2722977..2723312 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  SBO70_RS13360 (SBO70_13360) tasA 2723360..2724145 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  SBO70_RS13365 (SBO70_13365) sipW 2724210..2724794 (-) 585 WP_015240205.1 signal peptidase I SipW -
  SBO70_RS13370 (SBO70_13370) tapA 2724766..2725437 (-) 672 WP_031378945.1 amyloid fiber anchoring/assembly protein TapA -
  SBO70_RS13375 (SBO70_13375) - 2725696..2726025 (+) 330 WP_039254490.1 DUF3889 domain-containing protein -
  SBO70_RS13380 (SBO70_13380) - 2726065..2726244 (-) 180 WP_003153093.1 YqzE family protein -
  SBO70_RS13385 (SBO70_13385) comGG 2726301..2726678 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  SBO70_RS13390 (SBO70_13390) comGF 2726679..2727179 (-) 501 WP_257738552.1 competence type IV pilus minor pilin ComGF -
  SBO70_RS13395 (SBO70_13395) comGE 2727088..2727402 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  SBO70_RS13400 (SBO70_13400) comGD 2727386..2727823 (-) 438 WP_015417817.1 competence type IV pilus minor pilin ComGD Machinery gene
  SBO70_RS13405 (SBO70_13405) comGC 2727813..2728121 (-) 309 WP_015417818.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=901183 SBO70_RS13355 WP_003153104.1 2722977..2723312(+) (sinR) [Bacillus velezensis strain GJJK74]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=901183 SBO70_RS13355 WP_003153104.1 2722977..2723312(+) (sinR) [Bacillus velezensis strain GJJK74]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991