Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   SBK94_RS12240 Genome accession   NZ_CP137889
Coordinates   2511673..2512008 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain N23     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2506673..2517008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBK94_RS12220 (SBK94_12220) gcvT 2507284..2508384 (-) 1101 WP_014305405.1 glycine cleavage system aminomethyltransferase GcvT -
  SBK94_RS12225 (SBK94_12225) - 2508807..2510477 (+) 1671 WP_041481884.1 DEAD/DEAH box helicase -
  SBK94_RS12230 (SBK94_12230) - 2510495..2511289 (+) 795 WP_014305407.1 YqhG family protein -
  SBK94_RS12235 (SBK94_12235) sinI 2511466..2511639 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  SBK94_RS12240 (SBK94_12240) sinR 2511673..2512008 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  SBK94_RS12245 (SBK94_12245) tasA 2512056..2512841 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  SBK94_RS12250 (SBK94_12250) sipW 2512905..2513489 (-) 585 WP_014305408.1 signal peptidase I SipW -
  SBK94_RS12255 (SBK94_12255) tapA 2513461..2514132 (-) 672 WP_014305409.1 amyloid fiber anchoring/assembly protein TapA -
  SBK94_RS12260 (SBK94_12260) - 2514391..2514720 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  SBK94_RS12265 (SBK94_12265) - 2514760..2514939 (-) 180 WP_003153093.1 YqzE family protein -
  SBK94_RS12270 (SBK94_12270) comGG 2514996..2515373 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  SBK94_RS12275 (SBK94_12275) comGF 2515374..2515874 (-) 501 WP_014305411.1 competence type IV pilus minor pilin ComGF -
  SBK94_RS12280 (SBK94_12280) comGE 2515783..2516097 (-) 315 WP_041481885.1 competence type IV pilus minor pilin ComGE Machinery gene
  SBK94_RS12285 (SBK94_12285) comGD 2516081..2516518 (-) 438 WP_014305413.1 competence type IV pilus minor pilin ComGD Machinery gene
  SBK94_RS12290 (SBK94_12290) comGC 2516508..2516816 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=901108 SBK94_RS12240 WP_003153104.1 2511673..2512008(+) (sinR) [Bacillus velezensis strain N23]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=901108 SBK94_RS12240 WP_003153104.1 2511673..2512008(+) (sinR) [Bacillus velezensis strain N23]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991