Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   HK937_RS07600 Genome accession   NZ_CP137883
Coordinates   1486240..1487421 (-) Length   393 a.a.
NCBI ID   WP_224385805.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain P4549     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1481240..1492421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK937_RS07570 (HK937_0007570) - 1481784..1482125 (+) 342 WP_002784057.1 hypothetical protein -
  HK937_RS07575 (HK937_0007575) flgM 1482188..1482385 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  HK937_RS07580 (HK937_0007580) - 1482428..1482862 (+) 435 WP_002779263.1 flagellar protein FlgN -
  HK937_RS07585 (HK937_0007585) flgK 1482872..1484698 (+) 1827 WP_002858862.1 flagellar hook-associated protein FlgK -
  HK937_RS07590 (HK937_0007590) - 1484715..1485479 (+) 765 WP_002851318.1 TIGR02757 family protein -
  HK937_RS07595 (HK937_0007595) - 1485483..1486253 (+) 771 WP_224385806.1 TSUP family transporter -
  HK937_RS07600 (HK937_0007600) ctsF 1486240..1487421 (-) 1182 WP_224385805.1 type II secretion system F family protein Machinery gene
  HK937_RS07605 (HK937_0007605) ctsE 1487418..1488977 (-) 1560 WP_032582256.1 GspE/PulE family protein Machinery gene
  HK937_RS07610 (HK937_0007610) ctsX 1488967..1489554 (-) 588 WP_002851370.1 membrane protein Machinery gene
  HK937_RS07615 (HK937_0007615) ctsP 1489558..1490166 (-) 609 WP_044258944.1 ATP-binding protein Machinery gene
  HK937_RS07620 (HK937_0007620) ctsD 1490159..1491571 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HK937_RS07625 (HK937_0007625) ctsR 1491549..1491860 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45748.26 Da        Isoelectric Point: 8.8959

>NTDB_id=900967 HK937_RS07600 WP_224385805.1 1486240..1487421(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain P4549]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHAMLEIYNFLDDYGIFCIFLFVIFNVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=900967 HK937_RS07600 WP_224385805.1 1486240..1487421(-) (ctsF) [Campylobacter jejuni subsp. jejuni strain P4549]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAGGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGGTTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTACCTTTTATCACGCATGCAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTAATGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.214

99.746

0.98