Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   HK937_RS07615 Genome accession   NZ_CP137883
Coordinates   1489558..1490166 (-) Length   202 a.a.
NCBI ID   WP_044258944.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain P4549     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1484558..1495166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK937_RS07590 (HK937_0007590) - 1484715..1485479 (+) 765 WP_002851318.1 TIGR02757 family protein -
  HK937_RS07595 (HK937_0007595) - 1485483..1486253 (+) 771 WP_224385806.1 TSUP family transporter -
  HK937_RS07600 (HK937_0007600) ctsF 1486240..1487421 (-) 1182 WP_224385805.1 type II secretion system F family protein Machinery gene
  HK937_RS07605 (HK937_0007605) ctsE 1487418..1488977 (-) 1560 WP_032582256.1 GspE/PulE family protein Machinery gene
  HK937_RS07610 (HK937_0007610) ctsX 1488967..1489554 (-) 588 WP_002851370.1 membrane protein Machinery gene
  HK937_RS07615 (HK937_0007615) ctsP 1489558..1490166 (-) 609 WP_044258944.1 ATP-binding protein Machinery gene
  HK937_RS07620 (HK937_0007620) ctsD 1490159..1491571 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HK937_RS07625 (HK937_0007625) ctsR 1491549..1491860 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23770.84 Da        Isoelectric Point: 10.0768

>NTDB_id=900970 HK937_RS07615 WP_044258944.1 1489558..1490166(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain P4549]
MSKIIPFREEIFHQINQILESRKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=900970 HK937_RS07615 WP_044258944.1 1489558..1490166(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain P4549]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCGAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.01

100

0.99