Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   HK937_RS07625 Genome accession   NZ_CP137883
Coordinates   1491549..1491860 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni strain P4549     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1486549..1496860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK937_RS07605 (HK937_0007605) ctsE 1487418..1488977 (-) 1560 WP_032582256.1 GspE/PulE family protein Machinery gene
  HK937_RS07610 (HK937_0007610) ctsX 1488967..1489554 (-) 588 WP_002851370.1 membrane protein Machinery gene
  HK937_RS07615 (HK937_0007615) ctsP 1489558..1490166 (-) 609 WP_044258944.1 ATP-binding protein Machinery gene
  HK937_RS07620 (HK937_0007620) ctsD 1490159..1491571 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  HK937_RS07625 (HK937_0007625) ctsR 1491549..1491860 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  HK937_RS07630 (HK937_0007630) nifJ 1491884..1495444 (-) 3561 WP_224385804.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  HK937_RS07635 (HK937_0007635) - 1495537..1496178 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=900972 HK937_RS07625 WP_002855438.1 1491549..1491860(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain P4549]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=900972 HK937_RS07625 WP_002855438.1 1491549..1491860(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain P4549]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1