Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   R2B76_RS27105 Genome accession   NZ_CP137800
Coordinates   5170308..5170670 (-) Length   120 a.a.
NCBI ID   WP_047931253.1    Uniprot ID   -
Organism   Priestia megaterium strain Y18-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5165308..5175670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B76_RS27095 (R2B76_27105) - 5165796..5168426 (+) 2631 WP_075421506.1 DEAD/DEAH box helicase -
  R2B76_RS27100 (R2B76_27110) - 5168725..5169771 (+) 1047 WP_318616546.1 LysM peptidoglycan-binding domain-containing protein -
  R2B76_RS27105 (R2B76_27115) ssbB 5170308..5170670 (-) 363 WP_047931253.1 single-stranded DNA-binding protein Machinery gene
  R2B76_RS27110 (R2B76_27120) - 5170767..5171204 (+) 438 WP_075421505.1 YwpF family protein -
  R2B76_RS27115 (R2B76_27125) - 5171728..5172150 (+) 423 WP_034648293.1 helix-turn-helix transcriptional regulator -
  R2B76_RS27120 (R2B76_27130) fabZ 5172179..5172613 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  R2B76_RS27125 (R2B76_27135) - 5172697..5173518 (-) 822 WP_318616553.1 flagellar hook-basal body protein -
  R2B76_RS27130 (R2B76_27140) - 5173542..5174366 (-) 825 WP_318616555.1 flagellar hook-basal body protein -
  R2B76_RS27135 (R2B76_27145) - 5174481..5175482 (-) 1002 WP_013085455.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13458.17 Da        Isoelectric Point: 7.1647

>NTDB_id=900746 R2B76_RS27105 WP_047931253.1 5170308..5170670(-) (ssbB) [Priestia megaterium strain Y18-01]
MINHIVLVGRLTKKPELRYTHEGVAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=900746 R2B76_RS27105 WP_047931253.1 5170308..5170670(-) (ssbB) [Priestia megaterium strain Y18-01]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTAGATATACCCATGAAGGGGTTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTAGTAGGGCGTGTACAAACGCGA
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

88.333

0.467