Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QP021_RS08115 Genome accession   NZ_CP156984
Coordinates   1681964..1682650 (-) Length   228 a.a.
NCBI ID   WP_001794049.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA-675     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1676964..1687650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP021_RS08095 (QP021_008095) rpsT 1677878..1678129 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  QP021_RS08100 (QP021_008100) holA 1678174..1679148 (-) 975 WP_001282571.1 DNA polymerase III subunit delta -
  QP021_RS08105 (QP021_008105) comEC 1679205..1681406 (-) 2202 WP_000967506.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QP021_RS08110 (QP021_008110) - 1681411..1681872 (-) 462 WP_000439692.1 ComE operon protein 2 -
  QP021_RS08115 (QP021_008115) comEA 1681964..1682650 (-) 687 WP_001794049.1 ComEA family DNA-binding protein Machinery gene
  QP021_RS08120 (QP021_008120) - 1682690..1683406 (-) 717 WP_000084835.1 class I SAM-dependent methyltransferase -
  QP021_RS08125 (QP021_008125) rsfS 1683409..1683762 (-) 354 WP_001088020.1 ribosome silencing factor -
  QP021_RS08130 (QP021_008130) yqeK 1683763..1684347 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QP021_RS08135 (QP021_008135) nadD 1684337..1684906 (-) 570 WP_000822938.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QP021_RS08140 (QP021_008140) yhbY 1684909..1685199 (-) 291 WP_000955232.1 ribosome assembly RNA-binding protein YhbY -
  QP021_RS08145 (QP021_008145) aroE 1685203..1686009 (-) 807 WP_000666750.1 shikimate dehydrogenase -
  QP021_RS08150 (QP021_008150) yqeH 1686023..1687123 (-) 1101 WP_001280133.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25766.38 Da        Isoelectric Point: 9.3383

>NTDB_id=900571 QP021_RS08115 WP_001794049.1 1681964..1682650(-) (comEA) [Staphylococcus aureus strain SA-675]
MVLLYQFLLRYKDFLAQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTVLKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLNSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=900571 QP021_RS08115 WP_001794049.1 1681964..1682650(-) (comEA) [Staphylococcus aureus strain SA-675]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAGCTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
TTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAATTCTTATTTCACGACATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

95.595

99.561

0.952
  comEA Staphylococcus aureus N315

95.595

99.561

0.952