Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RGF10_RS01015 Genome accession   NZ_CP137761
Coordinates   181308..181823 (+) Length   171 a.a.
NCBI ID   WP_318506490.1    Uniprot ID   -
Organism   Bacillus sp. T3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 176308..186823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGF10_RS00990 tnpB 176771..177952 (+) 1182 WP_318506481.1 IS200/IS605 family element RNA-guided endonuclease TnpB -
  RGF10_RS00995 - 178159..179047 (+) 889 Protein_166 mechanosensitive ion channel family protein -
  RGF10_RS01000 - 179023..179220 (+) 198 WP_318506483.1 DUF951 domain-containing protein -
  RGF10_RS01005 ychF 179378..180478 (+) 1101 WP_318506485.1 redox-regulated ATPase YchF -
  RGF10_RS01010 rpsF 180938..181228 (+) 291 WP_318506488.1 30S ribosomal protein S6 -
  RGF10_RS01015 ssbA 181308..181823 (+) 516 WP_318506490.1 single-stranded DNA-binding protein Machinery gene
  RGF10_RS01020 rpsR 181874..182113 (+) 240 WP_147536005.1 30S ribosomal protein S18 -
  RGF10_RS01025 - 182425..183366 (+) 942 WP_318506494.1 YybS family protein -
  RGF10_RS01030 - 183426..185400 (+) 1975 Protein_173 DHH family phosphoesterase -
  RGF10_RS01035 rplI 185397..185846 (+) 450 WP_318506496.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18946.76 Da        Isoelectric Point: 4.8195

>NTDB_id=900550 RGF10_RS01015 WP_318506490.1 181308..181823(+) (ssbA) [Bacillus sp. T3]
MMNRVVLVGRLTKDPDLRYTPNGVPVATFTLAVNRTFSNQQGEKEADFINCVIWRRPAENVANFLKKGSLAGVDGRIQTR
SYEGQDGKRVYVTEVVADSVQFLEPRGSASGDRGGSGTGYNEPREQGFPFGNNQNQNQRPNNNNNKGYQRVDEDPFAGDG
QIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=900550 RGF10_RS01015 WP_318506490.1 181308..181823(+) (ssbA) [Bacillus sp. T3]
ATGATGAATCGTGTAGTACTTGTAGGCCGTTTAACAAAAGATCCTGATCTTCGCTATACACCGAATGGCGTACCAGTGGC
AACCTTTACTCTTGCTGTAAATCGGACTTTTTCGAATCAACAAGGTGAAAAGGAAGCAGATTTTATTAACTGTGTTATTT
GGAGACGTCCTGCAGAGAATGTAGCCAATTTCTTGAAAAAGGGAAGCCTCGCTGGGGTGGACGGACGAATTCAAACACGT
AGTTATGAAGGACAAGATGGGAAACGCGTTTATGTAACAGAAGTAGTAGCAGATAGTGTTCAATTTCTTGAACCAAGAGG
CAGTGCTTCTGGTGACAGAGGCGGAAGTGGAACCGGTTATAACGAACCACGGGAGCAAGGCTTTCCGTTTGGAAATAATC
AAAATCAGAATCAACGACCTAACAATAACAACAATAAAGGCTATCAACGTGTGGATGAAGATCCATTTGCAGGCGATGGA
CAAATTGACATCTCTGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.292

100

0.69
  ssb Latilactobacillus sakei subsp. sakei 23K

56.25

100

0.579
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.988

0.398