Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   R2H34_RS05555 Genome accession   NZ_CP137746
Coordinates   1135460..1137874 (+) Length   804 a.a.
NCBI ID   WP_042891837.1    Uniprot ID   -
Organism   Acinetobacter sp. 16     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1130460..1142874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2H34_RS05530 - 1131486..1131956 (+) 471 WP_004913645.1 YaiI/YqxD family protein -
  R2H34_RS05535 - 1131964..1132851 (+) 888 WP_042891841.1 DMT family transporter -
  R2H34_RS05540 - 1132862..1133434 (-) 573 WP_004952935.1 PilZ domain-containing protein -
  R2H34_RS05545 - 1133460..1134695 (+) 1236 WP_042891840.1 lipoprotein-releasing ABC transporter permease subunit -
  R2H34_RS05550 lolD 1134688..1135374 (+) 687 WP_004959844.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  R2H34_RS05555 comA/comEC 1135460..1137874 (+) 2415 WP_042891837.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  R2H34_RS05560 - 1137882..1138826 (-) 945 WP_042891836.1 lysophospholipid acyltransferase family protein -
  R2H34_RS05565 sppA 1138965..1139987 (+) 1023 WP_042891834.1 signal peptide peptidase SppA -
  R2H34_RS05570 - 1140162..1140953 (+) 792 WP_087540478.1 alpha/beta fold hydrolase -
  R2H34_RS05575 purN 1141005..1141634 (-) 630 WP_171133379.1 phosphoribosylglycinamide formyltransferase -
  R2H34_RS05580 purM 1141631..1142701 (-) 1071 WP_042891830.1 phosphoribosylformylglycinamidine cyclo-ligase -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 92609.96 Da        Isoelectric Point: 8.3495

>NTDB_id=900501 R2H34_RS05555 WP_042891837.1 1135460..1137874(+) (comA/comEC) [Acinetobacter sp. 16]
MLKIILIGWIVGISAMGRDFEIINSTWWIWCCIATLLFIFYKIKNKGHSPFYKSLLLITAIWAMFCAGYHYADQALEKRL
ELRELESQPFEAVVYIRKINELTEEGVKQQAVVLNRHDQLVNWLMYIKEKDHQPEAFVLGSYYRVYGTIKPAHSYAVQGV
FDQEKWFLQQNLMSAFLVEQIVPLSQDEVYRLGHLKYLKEQDHFLEKIGLKIEIMRFEFRQTLAHSNLQHKGLLLALLTG
DESLLAKDLKKKFQQLGISHLLAISGPHVLIFAIMLTWGLQRVLQHYFPNLYLWQPRQIILVFPFLFSVIVYVAFVGFEI
PALRTLLTVALASFFVITSQAIKPFQLLIYSACLFLIYDPFSILSAAFWLSYGACFILLRIYQTISTLPKDRIKNRTEDI
KFAIKILIESQWKIFIALMPLVIIFFQQIAWFAPLSNLIAIPILSMLVVPLDIFAACVWLIFPSLGLVLFTLNNMLLSIL
IGLLDVLMSLTPDLQGISYIPLSLFALSVGIFILFMPKGTIPKSWGLVCFLPILFGAKQQKTMLTILDVGQGQSVFLQQA
QHNLMIDTGGSYNEEKFSLGERVIVPFLRQQGIEKLDQMILSHLDQDHSGAFPYIEQAFEITKVYANEKNDKLPFKDNFS
FCHQGQKWNLAQAQVEILSPKIEELSYVQNQQNEYSCVVYIEFEHAKPFRKFLIMGDAGWETEYKLLQQYPNLEVDVIVL
GHHGSKHSSAYDFLARIKPKLAIASAGFENRYGHPSIELQQRLRALNIPLLTTSQNGSISFEINHANTVISMYRQQRKWL
TRLQ

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=900501 R2H34_RS05555 WP_042891837.1 1135460..1137874(+) (comA/comEC) [Acinetobacter sp. 16]
ATGTTGAAAATTATATTGATTGGCTGGATTGTGGGTATTTCAGCTATGGGGCGTGATTTTGAAATCATTAATTCCACTTG
GTGGATTTGGTGCTGTATTGCGACTCTTCTATTTATTTTTTATAAAATAAAAAATAAAGGACATTCCCCATTTTATAAGT
CACTGTTATTGATCACTGCGATTTGGGCAATGTTTTGTGCAGGGTATCACTATGCAGATCAAGCTCTAGAAAAAAGACTT
GAATTACGCGAATTAGAATCGCAACCATTTGAGGCTGTTGTTTATATTCGAAAAATAAATGAACTCACTGAAGAGGGTGT
TAAACAACAAGCTGTAGTTTTAAATCGACATGATCAATTAGTGAATTGGTTGATGTACATAAAGGAGAAGGATCATCAGC
CAGAAGCTTTTGTATTGGGGAGCTATTATCGAGTTTACGGAACAATCAAACCCGCACACAGTTATGCCGTTCAAGGTGTT
TTTGATCAAGAAAAATGGTTCTTACAACAAAATTTAATGTCAGCATTTTTAGTCGAACAAATCGTACCTTTAAGCCAAGA
TGAGGTGTATAGGCTTGGTCATTTGAAATACTTGAAGGAGCAAGACCATTTCTTGGAAAAAATCGGTCTTAAGATTGAAA
TAATGCGATTTGAATTTAGGCAAACGCTTGCTCATTCAAATTTACAACACAAAGGATTGTTGCTTGCGTTGCTTACAGGT
GATGAAAGTTTATTAGCTAAAGATTTAAAGAAAAAATTTCAGCAACTTGGGATATCACATTTATTGGCGATCTCGGGTCC
TCATGTGCTGATTTTTGCAATCATGTTGACATGGGGATTGCAAAGAGTTTTACAGCATTATTTTCCAAACTTATATCTAT
GGCAACCTCGTCAGATTATTTTGGTTTTTCCATTTTTATTTAGTGTCATTGTTTATGTCGCTTTTGTTGGATTTGAAATT
CCAGCTTTAAGGACATTGTTGACGGTCGCCTTGGCAAGTTTTTTCGTTATCACAAGCCAAGCGATTAAGCCTTTTCAGTT
ACTAATTTATAGCGCGTGTTTATTTCTCATCTATGATCCATTTAGTATCTTGTCGGCTGCCTTTTGGCTATCTTACGGTG
CATGTTTCATCCTATTGAGAATTTATCAAACGATTAGCACTCTACCAAAAGACAGAATAAAAAATAGAACTGAGGATATA
AAGTTTGCAATCAAAATTTTGATCGAATCACAATGGAAAATCTTTATCGCCTTAATGCCCTTAGTTATCATTTTTTTCCA
ACAAATTGCTTGGTTTGCGCCACTCAGTAATCTGATTGCTATCCCGATATTAAGCATGTTGGTTGTACCTTTAGATATCT
TTGCTGCATGTGTTTGGCTAATTTTTCCTTCATTAGGTCTAGTTTTATTCACCCTCAATAATATGTTGTTAAGCATACTA
ATCGGATTATTAGATGTTTTGATGTCACTGACACCTGATTTACAAGGTATTAGTTATATCCCATTGTCGTTATTTGCTTT
GAGTGTCGGGATTTTTATTTTATTTATGCCGAAAGGAACGATACCAAAATCTTGGGGTTTAGTTTGTTTCTTACCTATTT
TATTCGGTGCAAAACAACAAAAGACTATGCTAACCATTTTAGATGTGGGGCAGGGACAATCTGTATTTTTACAACAAGCT
CAGCATAACCTAATGATAGATACTGGTGGTTCATATAATGAAGAGAAGTTCAGTTTAGGTGAGCGAGTGATTGTTCCATT
TCTTCGACAGCAGGGGATCGAAAAATTAGATCAAATGATTTTGTCACATCTCGATCAAGACCATAGTGGTGCTTTCCCAT
ATATTGAGCAAGCCTTCGAGATCACAAAAGTTTATGCCAATGAAAAAAATGACAAATTGCCATTTAAAGATAATTTTTCT
TTTTGTCATCAAGGTCAAAAATGGAATTTAGCTCAAGCTCAGGTTGAGATTCTATCTCCAAAAATAGAGGAGCTGAGTTA
TGTTCAAAATCAACAAAATGAATATTCATGTGTTGTGTATATTGAGTTTGAACATGCCAAACCGTTTCGCAAATTCTTAA
TTATGGGGGATGCAGGTTGGGAAACAGAATATAAGCTATTACAGCAATATCCAAACTTAGAAGTAGATGTCATTGTTTTG
GGGCATCATGGAAGCAAACATAGTTCAGCTTATGATTTTTTAGCAAGAATTAAACCTAAATTGGCAATCGCTTCCGCAGG
TTTTGAAAATCGTTATGGTCATCCGAGTATTGAATTACAGCAAAGATTGCGAGCATTAAATATTCCATTGTTGACGACCA
GCCAAAACGGATCGATCTCCTTTGAAATCAATCATGCAAATACCGTAATTTCCATGTACAGACAACAACGTAAATGGTTA
ACTCGGTTGCAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(237-514)

Domain of unknown function (DUF4131) (DUF4131)

(25-176)

Metallo-beta-lactamase superfamily (Lactamase_B)

(548-628)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

53.144

100

0.536
  comA/comEC Acinetobacter baumannii strain A118

53.021

100

0.535
  comA/comEC Acinetobacter baylyi ADP1

49.32

100

0.496