Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   R2H34_RS03465 Genome accession   NZ_CP137746
Coordinates   728564..728989 (+) Length   141 a.a.
NCBI ID   WP_039047742.1    Uniprot ID   -
Organism   Acinetobacter sp. 16     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 723564..733989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2H34_RS03450 - 724571..726877 (+) 2307 WP_004960720.1 RelA/SpoT family protein -
  R2H34_RS03455 - 726917..727690 (-) 774 WP_039047740.1 SDR family oxidoreductase -
  R2H34_RS03460 mazG 727789..728595 (+) 807 WP_039047741.1 nucleoside triphosphate pyrophosphohydrolase -
  R2H34_RS03465 comEA 728564..728989 (+) 426 WP_039047742.1 ComEA family DNA-binding protein Machinery gene
  R2H34_RS03470 pcnB 729128..730582 (+) 1455 WP_039047743.1 polynucleotide adenylyltransferase PcnB -
  R2H34_RS03475 folK 730579..731067 (+) 489 WP_004960709.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  R2H34_RS03480 panB 731107..731916 (+) 810 WP_004906704.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  R2H34_RS03485 panC 731920..732765 (+) 846 WP_004960706.1 pantoate--beta-alanine ligase -
  R2H34_RS03490 rapZ 732795..733646 (+) 852 WP_004906708.1 RNase adapter RapZ -
  R2H34_RS03495 - 733643..733912 (+) 270 WP_039047744.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16203.65 Da        Isoelectric Point: 10.5292

>NTDB_id=900495 R2H34_RS03465 WP_039047742.1 728564..728989(+) (comEA) [Acinetobacter sp. 16]
MILSKPRSRHNLFILILLWLGCYTSGYAQQFDQSYEKWKAQQQARDQQLAKQPNNSYYLSRPSQQNTKQFSSSINIQSDK
ISLNQANLEQLQTLNGVGQKKAQAIIEYRQKKGGFKTIDELMNVKGIGPKLLEKNKAKLIL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=900495 R2H34_RS03465 WP_039047742.1 728564..728989(+) (comEA) [Acinetobacter sp. 16]
ATGATTTTGTCGAAGCCACGCAGCAGACATAATCTATTTATACTGATTTTACTATGGCTTGGGTGTTATACAAGTGGTTA
TGCGCAGCAATTTGATCAATCTTATGAAAAGTGGAAAGCTCAACAGCAAGCGCGTGACCAGCAGTTAGCTAAACAGCCCA
ACAATAGTTACTATTTATCAAGACCTAGTCAGCAAAACACCAAACAATTTTCATCTTCTATAAATATTCAGTCAGATAAA
ATTAGTTTGAATCAGGCAAATCTAGAACAGTTACAAACTTTGAATGGAGTGGGACAGAAAAAAGCTCAAGCAATCATTGA
ATACCGCCAAAAGAAGGGTGGTTTTAAAACAATAGATGAATTAATGAATGTAAAAGGAATCGGGCCAAAACTGCTTGAGA
AGAATAAAGCAAAGCTCATACTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(78-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

50.746

95.035

0.482
  comEA Acinetobacter baumannii D1279779

49.254

95.035

0.468
  comEA Acinetobacter baylyi ADP1

42.222

95.745

0.404