Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   R6I06_RS17100 Genome accession   NZ_CP137711
Coordinates   3224202..3224846 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis isolate FELIX_MS886     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3219202..3229846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6I06_RS17065 (R6I06_17065) mrpB 3220394..3220825 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  R6I06_RS17070 (R6I06_17070) mrpC 3220825..3221166 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  R6I06_RS17075 (R6I06_17075) mrpD 3221159..3222640 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  R6I06_RS17080 (R6I06_17080) mrpE 3222646..3223122 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  R6I06_RS17085 (R6I06_17085) mrpF 3223122..3223406 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  R6I06_RS17090 (R6I06_17090) mnhG 3223390..3223764 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  R6I06_RS17095 (R6I06_17095) yuxO 3223803..3224183 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  R6I06_RS17100 (R6I06_17100) comA 3224202..3224846 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  R6I06_RS17105 (R6I06_17105) comP 3224927..3227233 (-) 2307 Protein_3314 two-component system sensor histidine kinase ComP -
  R6I06_RS17110 (R6I06_17110) comX 3227248..3227415 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  R6I06_RS17115 (R6I06_17115) comQ 3227403..3228301 (-) 899 Protein_3316 ComX modifying isoprenyl transferase ComQ -
  R6I06_RS17120 (R6I06_17120) degQ 3228486..3228626 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  R6I06_RS17125 (R6I06_17125) - 3228848..3228973 (+) 126 WP_003228793.1 hypothetical protein -
  R6I06_RS17130 (R6I06_17130) - 3229087..3229455 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=900144 R6I06_RS17100 WP_003220716.1 3224202..3224846(-) (comA) [Bacillus subtilis isolate FELIX_MS886]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=900144 R6I06_RS17100 WP_003220716.1 3224202..3224846(-) (comA) [Bacillus subtilis isolate FELIX_MS886]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1