Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | LDO90_RS17600 | Genome accession | NZ_AP025147 |
| Coordinates | 3923151..3923738 (-) | Length | 195 a.a. |
| NCBI ID | WP_101114080.1 | Uniprot ID | A0AAV5NVE7 |
| Organism | Vibrio penaeicida strain IFO 15641 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3918151..3928738
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO90_RS17580 | aroB | 3919064..3920152 (-) | 1089 | WP_104400116.1 | 3-dehydroquinate synthase | - |
| LDO90_RS17585 | aroK | 3920175..3920693 (-) | 519 | WP_101114086.1 | shikimate kinase AroK | - |
| LDO90_RS17590 | pilQ | 3920882..3922600 (-) | 1719 | WP_399481255.1 | type IV pilus secretin PilQ | Machinery gene |
| LDO90_RS17595 | pilP | 3922646..3923158 (-) | 513 | WP_101114082.1 | pilus assembly protein PilP | Machinery gene |
| LDO90_RS17600 | pilO | 3923151..3923738 (-) | 588 | WP_101114080.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| LDO90_RS17605 | pilN | 3923735..3924295 (-) | 561 | WP_126606771.1 | PilN domain-containing protein | Machinery gene |
| LDO90_RS17610 | pilM | 3924288..3925304 (-) | 1017 | WP_126606772.1 | type IV pilus assembly protein PilM | Machinery gene |
| LDO90_RS17615 | - | 3925449..3927944 (+) | 2496 | WP_126606773.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 22825.99 Da Isoelectric Point: 4.2772
>NTDB_id=90014 LDO90_RS17600 WP_101114080.1 3923151..3923738(-) (pilO) [Vibrio penaeicida strain IFO 15641]
MIDWQDLDFEDLPEWPLPAQLLVFGLLFLLIQALGSWFYLAPMNEELEQLRQKEQTLKSTLIIKTNKVAALPKLEEQLDE
LNSRYDYLLKQLPEQKELASMLASVNELGIQHGLTFTRIDWGEKQNQEFLYRLPLNIELTGTYQNIGEFSAAIANLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVSDE
MIDWQDLDFEDLPEWPLPAQLLVFGLLFLLIQALGSWFYLAPMNEELEQLRQKEQTLKSTLIIKTNKVAALPKLEEQLDE
LNSRYDYLLKQLPEQKELASMLASVNELGIQHGLTFTRIDWGEKQNQEFLYRLPLNIELTGTYQNIGEFSAAIANLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKPEVSDE
Nucleotide
Download Length: 588 bp
>NTDB_id=90014 LDO90_RS17600 WP_101114080.1 3923151..3923738(-) (pilO) [Vibrio penaeicida strain IFO 15641]
ATGATTGACTGGCAAGACCTTGATTTTGAAGACTTGCCAGAATGGCCACTTCCAGCACAACTTTTGGTATTTGGGCTTCT
TTTTCTTTTAATACAGGCGCTGGGCAGCTGGTTTTATCTCGCGCCAATGAATGAAGAACTGGAGCAGCTACGCCAAAAAG
AACAAACCCTGAAAAGCACGCTGATCATCAAAACCAATAAAGTAGCTGCATTACCTAAATTGGAAGAACAATTAGATGAA
CTCAACAGCCGCTATGACTACTTGTTAAAGCAGTTACCGGAACAGAAAGAGTTGGCAAGTATGCTTGCGTCGGTCAATGA
GTTGGGCATTCAACATGGGCTAACGTTTACCCGTATTGACTGGGGTGAAAAGCAAAATCAGGAATTCTTATATCGATTGC
CTCTAAACATTGAACTGACAGGGACTTACCAAAATATTGGCGAATTTTCTGCGGCAATCGCTAACTTACCTCGAATCATA
AATTTTGATGATGTTGATTGGCAGAGAGTGAGCCAAGAAAGCAGCACACTGCACTTTAGGGTAAGGGCCTACACATATCA
GTTTAAACCGGAGGTGAGTGATGAATAA
ATGATTGACTGGCAAGACCTTGATTTTGAAGACTTGCCAGAATGGCCACTTCCAGCACAACTTTTGGTATTTGGGCTTCT
TTTTCTTTTAATACAGGCGCTGGGCAGCTGGTTTTATCTCGCGCCAATGAATGAAGAACTGGAGCAGCTACGCCAAAAAG
AACAAACCCTGAAAAGCACGCTGATCATCAAAACCAATAAAGTAGCTGCATTACCTAAATTGGAAGAACAATTAGATGAA
CTCAACAGCCGCTATGACTACTTGTTAAAGCAGTTACCGGAACAGAAAGAGTTGGCAAGTATGCTTGCGTCGGTCAATGA
GTTGGGCATTCAACATGGGCTAACGTTTACCCGTATTGACTGGGGTGAAAAGCAAAATCAGGAATTCTTATATCGATTGC
CTCTAAACATTGAACTGACAGGGACTTACCAAAATATTGGCGAATTTTCTGCGGCAATCGCTAACTTACCTCGAATCATA
AATTTTGATGATGTTGATTGGCAGAGAGTGAGCCAAGAAAGCAGCACACTGCACTTTAGGGTAAGGGCCTACACATATCA
GTTTAAACCGGAGGTGAGTGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
69.231 |
100 |
0.692 |
| pilO | Vibrio campbellii strain DS40M4 |
66.316 |
97.436 |
0.646 |