Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AABK15_RS18600 | Genome accession | NZ_AP027759 |
| Coordinates | 3825190..3825630 (+) | Length | 146 a.a. |
| NCBI ID | WP_000360904.1 | Uniprot ID | P36647 |
| Organism | Escherichia coli strain 2017-02-1CC | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3820190..3830630
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABK15_RS18580 (VEE73_35670) | aroP | 3821188..3822561 (+) | 1374 | WP_165386290.1 | aromatic amino acid transporter AroP | - |
| AABK15_RS18585 (VEE73_35680) | ampE | 3822604..3823458 (-) | 855 | WP_000172005.1 | beta-lactamase regulator AmpE | - |
| AABK15_RS18590 (VEE73_35690) | ampD | 3823455..3824006 (-) | 552 | WP_000923721.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AABK15_RS18595 (VEE73_35700) | nadC | 3824094..3824987 (+) | 894 | WP_001135174.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AABK15_RS18600 (VEE73_35710) | pilA | 3825190..3825630 (+) | 441 | WP_000360904.1 | prepilin peptidase-dependent pilin | Machinery gene |
| AABK15_RS18605 (VEE73_35720) | pilB | 3825640..3827025 (+) | 1386 | WP_001025145.1 | type II secretion system protein GspE | Machinery gene |
| AABK15_RS18610 (VEE73_35730) | hofC | 3827015..3828217 (+) | 1203 | WP_000157266.1 | protein transport protein HofC | - |
| AABK15_RS18615 (VEE73_35740) | guaC | 3828252..3829295 (-) | 1044 | WP_001217338.1 | GMP reductase | - |
| AABK15_RS18620 | - | 3829451..3829495 (-) | 45 | WP_120795372.1 | protein YacM | - |
| AABK15_RS18625 (VEE73_35750) | coaE | 3829520..3830140 (+) | 621 | WP_001269520.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15621.75 Da Isoelectric Point: 4.3938
>NTDB_id=90012 AABK15_RS18600 WP_000360904.1 3825190..3825630(+) (pilA) [Escherichia coli strain 2017-02-1CC]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=90012 AABK15_RS18600 WP_000360904.1 3825190..3825630(+) (pilA) [Escherichia coli strain 2017-02-1CC]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |