Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LDO90_RS01880 Genome accession   NZ_AP025147
Coordinates   387694..388326 (-) Length   210 a.a.
NCBI ID   WP_101111210.1    Uniprot ID   -
Organism   Vibrio penaeicida strain IFO 15641     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 382694..393326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO90_RS01870 rnr 384382..386841 (+) 2460 WP_126605766.1 ribonuclease R -
  LDO90_RS01875 rlmB 386859..387596 (+) 738 WP_126605767.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LDO90_RS01880 crp 387694..388326 (-) 633 WP_101111210.1 cAMP-activated global transcriptional regulator CRP Regulator
  LDO90_RS01885 - 388570..389439 (-) 870 WP_101111209.1 phosphoribulokinase -
  LDO90_RS01890 - 389596..389808 (-) 213 WP_101111208.1 YheU family protein -
  LDO90_RS01895 - 389824..390840 (-) 1017 WP_126605768.1 hydrolase -
  LDO90_RS01900 - 390837..392228 (-) 1392 WP_126605769.1 PLP-dependent aminotransferase family protein -
  LDO90_RS01905 - 392350..392946 (+) 597 WP_126605770.1 LysE family translocator -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23655.39 Da        Isoelectric Point: 7.4009

>NTDB_id=89983 LDO90_RS01880 WP_101111210.1 387694..388326(-) (crp) [Vibrio penaeicida strain IFO 15641]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSSQMANRLQTTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89983 LDO90_RS01880 WP_101111210.1 387694..388326(-) (crp) [Vibrio penaeicida strain IFO 15641]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCACAAGTACCCTTCTAA
GAGTACTCTGATTCATGCGGGTGAAAAGGCAGAGACCCTGTACTACATCGTGAAAGGTTCTGTTGCCGTGCTTATCAAGG
ATGAAGAAGGCAAAGAGATGATCTTGTCTTACCTCAACCAAGGCGATTTCATTGGTGAACTTGGTCTATTTGAAGAAGAC
CAAGAACGTACCGCTTGGGTACGTGCAAAAACACCATGTGAAGTAGCAGAAATTTCGTTTAAGAAGTTCCGTCAGTTAAT
TCAAGTTAACCCTGATATTCTGATGCGCCTTTCTTCTCAAATGGCTAACCGTCTTCAAACTACTAGCCAAAAAGTAGGCG
ATCTTGCTTTCCTAGACGTTACTGGCCGTATCGCTCAGACACTTCTGAACTTAGCGAAACAACCAGATGCGATGACGCAC
CCAGATGGCATGCAAATCAAGATTACACGCCAGGAAATTGGTCAGATTGTTGGCTGTTCACGTGAAACCGTTGGTCGTAT
CTTGAAGATGCTGGAAGAGCAAAACCTGATTTCAGCACACGGTAAAACTATCGTGGTATACGGAACGCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment