Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   R6Y88_RS19430 Genome accession   NZ_CP137687
Coordinates   3804775..3805206 (+) Length   143 a.a.
NCBI ID   WP_015384089.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3799775..3810206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS19410 corA 3801018..3801971 (+) 954 WP_015483432.1 magnesium transporter CorA -
  R6Y88_RS19415 comGA 3802381..3803451 (+) 1071 WP_015483431.1 competence protein ComGA Machinery gene
  R6Y88_RS19420 comGB 3803438..3804475 (+) 1038 WP_015483430.1 comG operon protein ComGB Machinery gene
  R6Y88_RS19425 comGC 3804489..3804785 (+) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  R6Y88_RS19430 comGD 3804775..3805206 (+) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  R6Y88_RS19435 comGE 3805190..3805537 (+) 348 WP_015384088.1 ComG operon protein 5 Machinery gene
  R6Y88_RS19440 comGF 3805563..3805946 (+) 384 WP_015384087.1 ComG operon protein ComGF Machinery gene
  R6Y88_RS19445 comGG 3805947..3806321 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  R6Y88_RS19450 spoIITA 3806393..3806572 (+) 180 WP_003230176.1 YqzE family protein -
  R6Y88_RS19455 yqzG 3806614..3806940 (-) 327 WP_015384086.1 YqzG/YhdC family protein -
  R6Y88_RS19460 tapA 3807210..3807971 (+) 762 WP_015384085.1 amyloid fiber anchoring/assembly protein TapA -
  R6Y88_RS19465 sipW 3807955..3808527 (+) 573 WP_080030740.1 signal peptidase I SipW -
  R6Y88_RS19470 tasA 3808591..3809376 (+) 786 WP_003230183.1 biofilm matrix protein TasA -
  R6Y88_RS19475 sinR 3809469..3809804 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  R6Y88_RS19480 sinI 3809838..3810011 (-) 174 WP_003230187.1 anti-repressor SinI Regulator

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16064.60 Da        Isoelectric Point: 9.6754

>NTDB_id=899764 R6Y88_RS19430 WP_015384089.1 3804775..3805206(+) (comGD) [Bacillus subtilis strain YT-4]
MNIKLNEEEGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAARQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVNGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=899764 R6Y88_RS19430 WP_015384089.1 3804775..3805206(+) (comGD) [Bacillus subtilis strain YT-4]
TTGAACATTAAATTAAACGAGGAGGAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGGCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTCATTGAACGTCCGTATGCAACGGGACTATCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAATGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

97.902

100

0.979