Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   R6Y88_RS19415 Genome accession   NZ_CP137687
Coordinates   3802381..3803451 (+) Length   356 a.a.
NCBI ID   WP_015483431.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3797381..3808451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS19385 yqgY 3797577..3797822 (-) 246 WP_003226300.1 DUF2626 domain-containing protein -
  R6Y88_RS19390 mgsR 3798054..3798434 (+) 381 WP_003230147.1 transcriptional regulator MgsR -
  R6Y88_RS19400 rsbRD 3798658..3799494 (+) 837 WP_015384093.1 RsbT co-antagonist protein RsbRD -
  R6Y88_RS19405 yqhB 3799547..3800875 (-) 1329 WP_003230150.1 hemolysin family protein -
  R6Y88_RS19410 corA 3801018..3801971 (+) 954 WP_015483432.1 magnesium transporter CorA -
  R6Y88_RS19415 comGA 3802381..3803451 (+) 1071 WP_015483431.1 competence protein ComGA Machinery gene
  R6Y88_RS19420 comGB 3803438..3804475 (+) 1038 WP_015483430.1 comG operon protein ComGB Machinery gene
  R6Y88_RS19425 comGC 3804489..3804785 (+) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  R6Y88_RS19430 comGD 3804775..3805206 (+) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  R6Y88_RS19435 comGE 3805190..3805537 (+) 348 WP_015384088.1 ComG operon protein 5 Machinery gene
  R6Y88_RS19440 comGF 3805563..3805946 (+) 384 WP_015384087.1 ComG operon protein ComGF Machinery gene
  R6Y88_RS19445 comGG 3805947..3806321 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  R6Y88_RS19450 spoIITA 3806393..3806572 (+) 180 WP_003230176.1 YqzE family protein -
  R6Y88_RS19455 yqzG 3806614..3806940 (-) 327 WP_015384086.1 YqzG/YhdC family protein -
  R6Y88_RS19460 tapA 3807210..3807971 (+) 762 WP_015384085.1 amyloid fiber anchoring/assembly protein TapA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=899761 R6Y88_RS19415 WP_015483431.1 3802381..3803451(+) (comGA) [Bacillus subtilis strain YT-4]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYITTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=899761 R6Y88_RS19415 WP_015483431.1 3802381..3803451(+) (comGA) [Bacillus subtilis strain YT-4]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGTGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCATTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTGACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTAGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATATAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

99.719

100

0.997
  pilF Thermus thermophilus HB27

36.827

99.157

0.365