Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   R6Y88_RS13915 Genome accession   NZ_CP137687
Coordinates   2752753..2753475 (+) Length   240 a.a.
NCBI ID   WP_015384784.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2747753..2758475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS13890 degS 2748064..2749221 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  R6Y88_RS13895 degU 2749304..2749993 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  R6Y88_RS13900 fakBA 2750091..2750936 (+) 846 WP_003227986.1 DegV family protein -
  R6Y88_RS13905 comFA 2751042..2752433 (+) 1392 WP_015384785.1 ATP-dependent helicase ComFA Machinery gene
  R6Y88_RS13910 comFB 2752493..2752789 (+) 297 WP_015483764.1 late competence protein ComFB -
  R6Y88_RS13915 comFC 2752753..2753475 (+) 723 WP_015384784.1 comF operon protein ComFC Machinery gene
  R6Y88_RS13920 yvyF 2753549..2753968 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  R6Y88_RS13925 flgM 2754049..2754315 (+) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  R6Y88_RS13930 flgN 2754331..2754813 (+) 483 WP_014481048.1 flagellar protein FlgN -
  R6Y88_RS13935 flgK 2754832..2756355 (+) 1524 WP_015384782.1 flagellar hook-associated protein FlgK -
  R6Y88_RS13940 flgL 2756366..2757262 (+) 897 WP_014478126.1 flagellar hook-associated protein FlgL -
  R6Y88_RS13945 yviE 2757309..2757884 (+) 576 WP_015384781.1 DUF6470 family protein -
  R6Y88_RS13950 fliW 2757905..2758336 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27495.71 Da        Isoelectric Point: 9.1388

>NTDB_id=899742 R6Y88_RS13915 WP_015384784.1 2752753..2753475(+) (comFC) [Bacillus subtilis strain YT-4]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLNKITGHICTLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=899742 R6Y88_RS13915 WP_015384784.1 2752753..2753475(+) (comFC) [Bacillus subtilis strain YT-4]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAATAAAATCACAGGACATA
TTTGCACTCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979